Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3 140 4e-28 seq1 109 6e-19 seq6 93.3 5e-14 seq9 91.5 2e-13 seq5 91.5 2e-13 seq2 89.7 6e-13 seq7 86.0 7e-12 seq4 86.0 7e-12 >seq3 Length=50312079 Score = 140 bits (154), Expect = 4e-28 Identities = 571/883 (65%), Gaps = 33/883 (4%) Strand=Plus/Minus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 || || || ||||||||| || ||||||||||| ||||| || | ||| || ||| | Sbjct 34659351 TTCTGATACTCCCCAACTCGCTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 34659292 Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAAT 92920 | || | | | |||||||| | ||||| ||| || |||| | ||| Sbjct 34659291 TCCATCCAATCAAATGGATTCTGCACATTATACATCTTCCCATACCCCAACGCTCCCAAC 34659232 Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA 92980 || ||||| || ||||| | || |||||| ||||||||| | |||||| || | | | Sbjct 34659231 AACCTATCCGCCACAAACTTAATATACTGACTCATCAAATCCCCATTCATCCCAACCAAA 34659172 Query 92981 CGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 | ||| || | ||| || | || || |||| || |||| || || | | | Sbjct 34659171 -GCACACGGCAAAGCATCACAAACAAACTCCCTCTCAATCTCAACCGCATCCG-CTACAA 34659114 Query 93040 TTCTATTA---CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 | | ||| | || || | | | || | | ||| ||| |||| | || || Sbjct 34659113 TCCCCTTAACCCGCTCCTCACTCG-GCTTCATCCTCAACA-AATCATACAACATACATGC 34659056 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156 ||| || ||| | ||| || || | || |||| |||||| ||| || || || || Sbjct 34659055 AAAATCACAATGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGAAAGTCAATCCGGG 34658996 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaaaTATAC 93215 | || || | ||||| |||||||| || | ||| || || || || ||||| || | Sbjct 34658995 CATAAGCCCCCTCTTCTTCAGCCAAAAAATCGC-GCAGAAGCTCCCCGAGAAAAAAATCC 34658937 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG--AT 93273 ||||||| ||||| || | ||| | || ||||| || || | || Sbjct 34658936 CTTCCACACAAGCAAACGCAATAATCCTCTCCGCAAA-----CGACTCCCCTCCATCAAT 34658882 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 ||| | | ||||| | ||| || |||| | ||| || | || || || || | || Sbjct 34658881 CCACCTCATCGCCCACTTGGCCTTCTTCTCGACACACGGAATCGTCTCAATCGCCCTGAA 34658822 Query 93334 TAGGTAATCTCGC----TCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 | | ||||| || |||||||| || || | || | |||| | ||||| Sbjct 34658821 CA----ACCTCGCCTTCTCCTCCGAATCCTTAATATAACTCTCCAACAACAAACTATACA 34658766 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 | || ||||| | |||||| || ||||| || || || || ||| || || |||| | Sbjct 34658765 TCTCCGAATGAATATTCTCTATCGCAATCTGAAACCCATAAAAAGCCCTCGCCTCCGCCA 34658706 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 |||||| || | ||| ||| | | | ||| || || || ||||| || || | Sbjct 34658705 CCTGCACCTCCTTCATAAACCTCCCGGCCAAATTCTCGAGCACAATGCCATCAGAAGCGG 34658646 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT--AAGCTTATCCCA 93567 | |||||||| | | ||| | ||||| || ||||||||| | |||||| |||| Sbjct 34658645 CGAAAAAAGCGAGAACATGGGTAATAAAGTGCTTCTCATCAGAAGTCAAAGCTT--CCCA 34658588 Query 93568 ATCGGATAG-ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 | | | | ||||| || | ||||||||| ||| | ||||| || || || || |||| Sbjct 34658587 GT-GAACATTATCTTGAGATAAATCGACTTCCTCGGCGGTCCAGAAAGAGGCCTCGGCTT 34658529 Query 93627 TTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 | |||||||| ||||| || | | ||||||||||| || || Sbjct 34658528 TCTTGTACATCTCCCAGATCTGAGGGTATTGAATTGGGAACAT 34658486 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/92 (82%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 3126341 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 3126284 Query 126325 GGGTTCGAACCCCACACCTGACA-AATTATTA 126355 |||||| || |||||| ||| || |||| ||| Sbjct 3126283 GGGTTCAAATCCCACAGCTGTCATAATTTTTA 3126252 >seq1 Length=51465339 Score = 109 bits (120), Expect = 6e-19 Identities = 381/592 (64%), Gaps = 11/592 (2%) Strand=Plus/Plus Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 |||| || ||||||||||| ||| || || || ||||| || |||| |||||| | Sbjct 39365685 TACAACAAACACGCAAAGTCACAATGCAATCCCTCATCTCGCGAAATCAGCTCATTCGAG 39365744 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 | || || || || | ||| |||| ||||| | |||||| | | |||||| || Sbjct 39365745 TAGGTCAATCCAGGCATCAGCCCTCTCTTCTTCAACCAAAACACCGCGCAAAAACTCCCC 39365804 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA---TTTGCG 93259 || ||||| || |||||||| ||||| |||||||| | || || ||| | | Sbjct 39365805 GAGAAAAAAATCCCTTCCACACAAGCAAACGCCACAATCCTCTCCGCGAAACACTCCCCT 39365864 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 || | ||||| | | ||||||| || || ||| | ||| || | || Sbjct 39365865 CCATCA------ATCCACCTCAGCGCCCAATTCGCCTTCCTCTCGACACACGGAATCGTC 39365918 Query 93320 TCGATAGCGTTAAA-TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 || || || |||| | || ||| ||| |||||| | || || || | | Sbjct 39365919 TCAATCGCCCTAAACAACCTACTCT-TCTCACACGAATCCTTCACATACGTCTCAAGAAG 39365977 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 || | |||||| || ||||| | |||||| || || || ||||| |||||||| || Sbjct 39365978 CAAACTATACATCTCCGAATGTATATTCTCGATCGCGATCTGGAAGCCGTAGAACGCCCT 39366037 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 ||| |||| | ||| || || | || || | ||||||| || || || || Sbjct 39366038 AGCCTCCGCCACCTGGACCTCCTTCATGAACCTGCCGGCGAGATTCTCGAGCACGATGCC 39366097 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 || || || || || ||||| | | || | | || |||||||| | | || Sbjct 39366098 GTCAGAAGCGGCGAAGAAAGCGAGCACGTGAGTGACGAAGTGTTTCTCGTTGGGAGTTAG 39366157 Query 93559 CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC 93618 | | ||| | |||| || | ||||||||||||| | ||||| || || || Sbjct 39366158 GGTTTGGAAATGAGCAGTGTCTTGCGATAAATCGACTTCTTCGGCGGTCCAGAAGGAAGC 39366217 Query 93619 TTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATG 93670 || ||||| |||||||| ||||| || | | ||||| || || || ||| Sbjct 39366218 CTCGGCTTTCTTGTACATTTCCCAGATTTGGGGGTATTGGATAGGGAACATG 39366269 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 43381107 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 43381164 Query 126325 GGGTTCGAACCCCACACCTGACAA 126348 |||||| || |||||| ||| ||| Sbjct 43381165 GGGTTCAAATCCCACAGCTGTCAA 43381188 >seq6 Length=36610139 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/107 (80%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 34268878 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 34268937 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||| || ||||| |||||| ||||| ||| ||||| || Sbjct 34268938 GTGGGTTCAAATCCCACTTCTGACATTTTATT-TTGCTTTTTTTTTT 34268983 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | | Sbjct 25561847 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGG 25561906 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 25561907 CGTGGGTTCAAATCCCACTTCTGACA 25561932 >seq9 Length=33682890 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCG 126323 ||| ||| |||||||||||||||||||||||||||||| | |||||| || | ||| Sbjct 22452492 CAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCG 22452435 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||| || |||||| ||| ||| || ||||| Sbjct 22452434 TGGGTTCAAATCCCACAGCTGTCAACTTTTTATT 22452401 >seq5 Length=41956025 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 126255 TTCTATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC 126314 || |||| | |||||| ||||||||||||||||||||||||| | ||| |||||| | | Sbjct 41464281 TTTTATTAAATGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTC 41464222 Query 126315 T--CGGGAGCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 | || | |||||||||| || ||||| |||||| || || | ||||||| Sbjct 41464221 TAACGAGGGCGTGGGTTCAAATCCCACTTCTGACAGTTTTTTGTGATAATTTTT 41464168 >seq2 Length=43913520 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/95 (82%), Gaps = 4/95 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||| Sbjct 35322115 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGC 35322056 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| ||||| |||||| || Sbjct 35322055 GTGGGTTCAAATCCCACTTCTGAC--ATTATTTTT 35322023 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 32073173 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 32073116 Query 126325 GGGTTCGAACCCCACACCTGACAA 126348 |||||| || |||||| ||| ||| Sbjct 32073115 GGGTTCAAATCCCACAGCTGTCAA 32073092 >seq7 Length=36358036 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||||| Sbjct 35265891 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGCG 35265950 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 35265951 TGGGTTCAAATCCCACTTCTGACA 35265974 >seq4 Length=35924511 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/92 (82%), Gaps = 6/92 (7%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 34215509 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAG 34215566 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| ||||||| || Sbjct 34215567 GGCGTGGGTTCAAATCCCACTTCTGACAATTT 34215598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556827207372240