Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 4e-14 seq2 84.2 2e-11 >seq6 Length=36610139 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| ||||| | ||||| || ||||| ||| | || ||| | Sbjct 34406532 ATGCAGATCTTTGTGAAAACTCTTACCGGAAAGACCATAACCCTTGAGGTTGAAAGCTCT 34406591 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | | || || || ||| ||||| |||||| | || |||||| Sbjct 34406592 GACACAATCGACAATGTCAAGGCTAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAG 34406651 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || |||||||| | |||||||||||| | || ||| | ||| | || || |||||| Sbjct 34406652 CAGAGGCTTATCTTTGCGGGCAAACAGCTCGAGGATGGAAGGACTTTAGCTGACTATAAT 34406711 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || ||||| || || ||||| || | ||||| |||||||||| Sbjct 34406712 ATTCAGAAGGAATCCACCCTTCATTTGGTTCTTCGTCTCCGCGGTGGCA 34406760 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| ||||| | || ||||| ||||||||| | ||| ||| | Sbjct 34406760 ATGCAGATCTTTGTTAAAACACTCACTGGCAAGACCATTACCTTAGAAGTTGAAAGCTCT 34406819 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | | || || || ||| ||||| |||||| |||| ||||| Sbjct 34406820 GACACCATTGACAATGTTAAGGCTAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAG 34406879 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || |||||||| | ||||||||||| | || ||| | || | || ||||| ||| Sbjct 34406880 CAGAGGCTTATCTTCGCGGGCAAACAGCTTGAGGATGGTCGTACATTAGCTGATTACAAT 34406939 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || ||||| || || ||| | || | ||||| || ||||||| Sbjct 34406940 ATTCAGAAGGAATCCACCCTTCATCTGGTTCTTCGTCTACGTGGTGGCA 34406988 >seq2 Length=43913520 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||| || || || |||||||||| || || ||| | || ||| Sbjct 39748490 ATGCAGATTTTCGTGAAGACTCTGACCGGCAAGACTATAACCCTAGAGGTGGAGAGTTCA 39748549 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | | || || || || ||||| ||||| |||| ||||| Sbjct 39748550 GATACCATTGACAATGTTAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 39748609 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | || | ||| || || ||| | || ||| || ||| |||| ||||||||| Sbjct 39748610 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAGGATGGTAGGACTCTGGCTGATTATAAT 39748669 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAAT 111417 || || || || || || || || || || |||||||| || ||||||||| Sbjct 39748670 ATCCAGAAGGAGTCCACCCTTCACTTGGTCTTGCGTCTCCGTGGTGGCAAT 39748720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423015118109200