Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq6 89.7 1e-12
seq4 89.7 1e-12
seq2 89.7 1e-12
seq8 87.8 4e-12
seq7 87.8 4e-12
seq5 87.8 4e-12
seq3 86.0 1e-11
>seq6
Length=36610139
Score = 89.7 bits (98), Expect = 1e-12
Identities = 198/289 (69%), Gaps = 6/289 (2%)
Strand=Plus/Minus
Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576
|||||| || |||||||||| || || || || | ||| | | | ||||| ||
Sbjct 13165368 TGACTTTGTCAACAAGGAGCTTATACTGTTTTCTATGGCGGATCTTCAAAGGTCTAT-CC 13165310
Query 218577 CAGCG-TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGC 218635
|| | |||| |||||||| || ||| || | || || || ||| | ||||||
Sbjct 13165309 CATCAATGGTTGATGGCCTGAAACCAGGACAAAGGAAAATTCTTTTTTGTTCTTTCAAGA 13165250
Query 218636 GGAACCTGGTTCAAGAAATT-AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCT 218694
|||| | |||| || || || || || || || |||||||| || || ||
Sbjct 13165249 GGAATTTTAC-CAAGCAAGCCAAAGTTGCACAATTCTCAGGTTATGTCTCGGAGCACTCA 13165191
Query 218695 GGCTACCATCACGGTGAGCAGAGTC-TGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753
| |||||||| ||||||||||||| |||| || | || || || ||||| ||||| |
Sbjct 13165190 GCTTACCATCATGGTGAGCAGAGTCTTGCA-AGTACAATAGTTGGTATGGCTCAGGATTT 13165132
Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802
||| || || || ||||| ||| | || || || | || |||||||||
Sbjct 13165131 TGTAGGTAGCAATAACATAAACCTTCTTCTACCGAGAGGGCAGTTTGGT 13165083
>seq4
Length=35924511
Score = 89.7 bits (98), Expect = 1e-12
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||
Sbjct 32675994 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 32676053
Query 142562 GCCCCAC 142568
|||||||
Sbjct 32676054 GCCCCAC 32676060
>seq2
Length=43913520
Score = 89.7 bits (98), Expect = 1e-12
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||
Sbjct 30759884 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 30759943
Query 142562 GCCCCAC 142568
|||||||
Sbjct 30759944 GCCCCAC 30759950
Score = 89.7 bits (98), Expect = 1e-12
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||
Sbjct 42021792 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 42021733
Query 142562 GCCCCAC 142568
|||||||
Sbjct 42021732 GCCCCAC 42021726
>seq8
Length=31745509
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 21378748 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 21378807
Query 142563 CCCCAC 142568
||||||
Sbjct 21378808 CCCCAC 21378813
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 31374803 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 31374744
Query 142563 CCCCAC 142568
||||||
Sbjct 31374743 CCCCAC 31374738
>seq7
Length=36358036
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 8551348 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8551407
Query 142563 CCCCAC 142568
||||||
Sbjct 8551408 CCCCAC 8551413
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 32235378 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 32235319
Query 142563 CCCCAC 142568
||||||
Sbjct 32235318 CCCCAC 32235313
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 8553204 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8553263
Query 142564 CCCAC 142568
|||||
Sbjct 8553264 CCCAC 8553268
>seq5
Length=41956025
Score = 87.8 bits (96), Expect = 4e-12
Identities = 60/68 (88%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||
Sbjct 7014744 ATTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 7014685
Query 142561 AGCCCCAC 142568
||||||||
Sbjct 7014684 AGCCCCAC 7014677
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 20148334 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 20148275
Query 142563 CCCCAC 142568
||||||
Sbjct 20148274 CCCCAC 20148269
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 20148565 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 20148506
Query 142563 CCCCAC 142568
||||||
Sbjct 20148505 CCCCAC 20148500
Score = 84.2 bits (92), Expect = 4e-11
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 30744390 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 30744331
Query 142564 CCCA 142567
||||
Sbjct 30744330 CCCA 30744327
>seq3
Length=50312079
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 30020742 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 30020801
Query 142564 CCCAC 142568
|||||
Sbjct 30020802 CCCAC 30020806
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027773245638666
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |