Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq6 107 1e-18 seq3 100 2e-16 seq2 89.7 4e-13 seq1 86.0 4e-12 >seq6 Length=36610139 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||||||| | || ||||| ||||||||| | ||| ||| | | Sbjct 34406760 ATGCAGATCTTTGTTAAAACACTCACTGGCAAGACCATTACCTTAGAAGTTGAAAGCTCT 34406819 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| || ||| || || || || | ||| | || Sbjct 34406820 GACACCATTGACAATGTTAAGGCTAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAG 34406879 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||| || |||||||| || || ||| || | || ||||||||| Sbjct 34406880 CAGAGGCTTATCTTCGCGGGCAAACAGCTTGAGGATGGTCGTACATTAGCTGATTACAAT 34406939 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| || |||||| |||| | ||| |||| || || Sbjct 34406940 ATTCAGAAGGAATCCACCCTTCATCTGGTTCTTCGTCTACGTGGTGG 34406986 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || | || || || || || ||| ||||| || | | Sbjct 34079353 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACCTTGGAAGTAGAGAGCTC 34079412 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || ||| | | | || ||||| ||| || || || ||||| | ||| | | || Sbjct 34079413 CGATACGATCGACAATGTTAAGGCAAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCA 34079472 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | || |||||||| || || | || || || || |||| |||||||| Sbjct 34079473 GCAGAGGTTGATATTTGCTGGGAAGCAGTTGGAGGACGGAAGGACCTTGGCAGATTACAA 34079532 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 |||||||||||||| ||||||||| ||||||| Sbjct 34079533 CATTCAGAAGGAATCCACTCTTCATTTGGTATT 34079565 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || || || ||||| || | || ||| | || Sbjct 34078898 ATGCAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACTCTTGAGGTAGAAAGCTCA 34078957 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| || || || ||| | ||| | | || Sbjct 34078958 GACACCATTGACAATGTCAAGGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGATCAG 34079017 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||||||||| ||||| || || ||| || | || ||||||||| Sbjct 34079018 CAGAGGCTTATCTTTGCTGGTAAACAGCTTGAGGATGGTCGCACCTTAGCTGATTACAAT 34079077 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| || |||||| |||| | ||| |||| || || Sbjct 34079078 ATTCAGAAGGAATCCACCCTTCATTTGGTTCTTCGTCTACGTGGTGG 34079124 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| | || || || ||||| || | || ||| | | Sbjct 34641346 ATGCAGATCTTTGTGAAAACTCTTACTGGGAAGACCATCACTCTTGAGGTAGAAAGCTCG 34641405 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| || ||||| ||| | ||| | | || Sbjct 34641406 GACACCATTGACAATGTCAAGGCTAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAG 34641465 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||| ||||| || || ||| || | || ||||||||| Sbjct 34641466 CAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGTACCTTAGCTGATTACAAT 34641525 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| || |||||| |||| | ||| |||| || || Sbjct 34641526 ATTCAGAAGGAATCGACCCTTCATTTGGTTCTTCGTCTACGTGGTGG 34641572 Score = 86.0 bits (94), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| ||||||||||| |||||||| || || ||| || ||| | || || || Sbjct 34406649 CAGCAGAGGCTTATCTTTGCGGGCAAACAGCTCGAGGATGGAAGGACTTTAGCTGACTAT 34406708 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||||||||| || |||||| |||| | ||| | || || || Sbjct 34406709 AATATTCAGAAGGAATCCACCCTTCATTTGGTTCTTCGTCTCCGCGGTGG 34406758 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || ||||| || || || || ||||| |||| ||| | | Sbjct 34407443 AATGCAGATTTTTGTGAAGACATTGACAGGAAAGACAATTACTTTGGAGGTGGAGAGCTC 34407502 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | ||| ||||||| |||||||| || | || | |||| Sbjct 34407503 AGACACAATTGATAATGTGAAGGCAAAAATTCAGGATAAAGAAGGCATCCCACCAGACCA 34407562 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || || |||||||| || || || || ||| || | || || ||||| Sbjct 34407563 GCAGAGGCTGATTTTTGCTGGTAAGCAGCTTGAGGATGGTCGTACCCTTGCTGACTACAA 34407622 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||| |||||||| || || |||| | ||| | |||| || Sbjct 34407623 TATTCAGAAAGAATCTACCCTCCACTTGGTGCTCCGTCTTAGAGGTGG 34407670 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || || || || || | ||| ||| | | Sbjct 34407672 ATGCAGATCTTTGTCAAGACGTTGACTGGGAAGACGATCACTCTAGAAGTTGAAAGCTCG 34407731 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | ||| || ||| || |||||||| | ||| | | || Sbjct 34407732 GACACGATTGATAATGTGAAGGCGAAGATTCAGGACAAAGAGGGCATCCCTCCAGATCAG 34407791 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || || ||||| ||| || ||| ||||||| ||||| Sbjct 34407792 CAGAGGTTGATCTTTGCTGGAAAGCAGCTAGAGGATGGAAGGACTTTGGCCGACTACAAC 34407851 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || ||||| |||||||| ||||| Sbjct 34407852 ATCCAGAAAGAATCTACCCTTCA 34407874 >seq3 Length=50312079 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || |||||| | || | |||| ||||| || ||||||||||| ||||| ||||| Sbjct 6143361 GACAAGGAGGGTATCCCACCAGACCAGCAGAGGCTCATCTTTGCTGGTAAACAGCTAGAG 6143420 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| | || ||||||||||||| ||||||||||| || || |||||| |||| | Sbjct 6143421 GATGGACGGACCTTGGCCGATTACAACATTCAGAAGGAGTCGACCCTTCATTTGGTTCTG 6143480 Query 22047 CGTTTACGAGGAGGA 22061 ||| |||| || ||| Sbjct 6143481 CGTCTACGTGGGGGA 6143495 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | ||||| | || ||||| || || ||| | || ||| | Sbjct 6143040 ATGCAGATATTTGTGAAAACTCTTACTGGCAAGACAATCACCCTCGAGGTTGAAAGTTCG 6143099 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || || ||| || || || ||| | ||| | | || Sbjct 6143100 GACACTATTGACAATGTCAAAGCGAAGATTCAAGACAAGGAAGGTATCCCTCCAGATCAG 6143159 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||| || || ||||| ||| | || | || |||||||| Sbjct 6143160 CAGAGGCTCATCTTTGCTGGTAAGCAGCTAGAGGATGGACGGACCTTAGCTGATTACAAC 6143219 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||| || || |||||| |||| | ||| |||| || ||| Sbjct 6143220 ATTCAGAAGGAGTCGACCCTTCATTTGGTTCTGCGTCTACGTGGGGGA 6143267 >seq2 Length=43913520 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || |||| || || || || || || || || ||||| || | || Sbjct 39747350 ATGCAGATCTTCGTTAAGACGTTGACCGGAAAGACGATCACTCTGGAAGTCGAGAGCTCA 39747409 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| ||||| ||||| | || |||| Sbjct 39747410 GACACAATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGCATTCCCCCGGACCAG 39747469 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| || || || || || || ||| |||| ||||||||| Sbjct 39747470 CAGAGATTGATCTTTGCTGGAAAGCAGCTCGAGGACGGAAGGACTCTGGCTGATTACAAT 39747529 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| || ||||| | || | ||| | || ||||| Sbjct 39747530 ATTCAGAAGGAATCCACCCTTCACCTTGTGCTCCGTCTTCGTGGAGG 39747576 >seq1 Length=51465339 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| || | || || || || || ||| ||||| ||| | | Sbjct 45561473 ATGCAGATCTTTGTTAAGACTCTGACTGGAAAGACTATCACCTTGGAAGTGGAGAGCTCC 45561532 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || ||| ||||| || ||| | ||| | | || Sbjct 45561533 GACACCATTGATAATGTGAAGGCCAAGATTCAGGATAAGGAAGGTATTCCTCCAGATCAG 45561592 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || || || || ||| || || | || ||||||||| Sbjct 45561593 CAGAGGTTGATCTTTGCTGGTAAGCAGCTTGAGGATGGAAGGACCCTTGCAGATTACAAT 45561652 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| ||||| ||||| |||| || ||| | || || || Sbjct 45561653 ATCCAGAAGGAGTCTACCCTTCACTTGGTGTTGCGTCTTCGTGGTGG 45561699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358103736218404