Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 116 7e-21 >seq1 Length=51465339 Score = 116 bits (128), Expect = 7e-21 Identities = 361/557 (65%), Gaps = 9/557 (2%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || || ||| |||||||||||| || | || | Sbjct 39366244 ATCTGGGAAATGTACAAGAAAGCCGAGGCTTCCTTCTGGACCGCCGAAGAAGTCGATTTA 39366185 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAAC 42419 | | ||||| || | | | || || ||||| || ||| ||| || Sbjct 39366184 TCGCAAGACACTGCTCATTTCCAAACCCTAACTCCCAACGAGAAACACTTCGTCACTCAC 39366125 Query 42420 ATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTC 42479 | || || ||||||||||| ||||||||||| || ||||| || ||| ||||||| Sbjct 39366124 GTGCTCGCTTTCTTCGCCGCTTCTGACGGCATCGTGCTCGAGAATCTCGCCGGCAGGTTC 39366065 Query 42480 ATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAG 42539 ||||| ||||| ||| ||||| | ||||||||||||||||| || || ||| Sbjct 39366064 ATGAAGGAGGTCCAGGTGGCGGAGGCTAGGGCGTTCTACGGCTTCCAGATCGCGATCGAG 39366005 Query 42540 AACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAG 42599 || | || || ||| |||| || || | ||||| | |||| | ||| Sbjct 39366004 AATATACATTCGGAGATGTATAGTTTGCTTCTTGAGACGTATGTGAAGGATTCGTGTGAG 39365945 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 | || |||| | ||| || |||||||| || || || ||| ||||||| | ||| Sbjct 39365944 AAGAGTAGGTTGTTTAGGGCGATTGAGACGATTCCGTGTGTCGAGAGGAAGGCGAATTGG 39365885 Query 42660 GCGCTCAACTGGATCGA--GAGTCCCGACGCAACG-TTCGGCGAGAGGCTGGTAGCCTTT 42716 ||||| | ||||| || ||| | | | |||| |||||| | || || ||| Sbjct 39365884 GCGCTGAGGTGGATTGATGGAG------GGGAGTGTTTCGCGGAGAGGATTGTGGCGTTT 39365831 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 | || || || || || |||||||| || | | | || ||| | ||| || Sbjct 39365830 GCTTGTGTGGAAGGGATTTTTTTCTCGGGGAGTTTTTGCGCGGTGTTTTGGTTGAAGAAG 39365771 Query 42777 AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 | | | |||||| ||| | |||| |||||| || || || | || ||||| || Sbjct 39365770 AGAGGGCTGATGCCTGGATTGACCTACTCGAATGAGCTGATTTCGCGAGATGAGGGATTG 39365711 Query 42837 CATAGGGACTTTGCCTG 42853 ||| | |||||||| || Sbjct 39365710 CATTGTGACTTTGCGTG 39365694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944282232737760