Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq3 95.1 1e-14 seq1 91.5 1e-13 seq4503 84.2 2e-11 >seq6 Length=36610139 Score = 107 bits (118), Expect = 2e-18 Identities = 167/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||||| || |||| |||||| ||| ||||| |||||||||||||||||| Sbjct 34642028 CCACCCCTCAGCCTCAATACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCTGCC 34641969 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || |||| | |||| ||||| ||||| || |||||||||| | ||||||||| || Sbjct 34641968 AA-TGTCCTTCCGTCCTCCAACTGCTTCCCAGCAAATATCAACCTCTGCTGATCTGGAGG 34641910 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAA---TGGAACTCACACTATCAGTAGAT-T 34075 | | ||||||||| || ||| ||||| || | | |||||| || | | Sbjct 34641909 AATTCCCTCTTTGTCTTGGATCTTTGCCTTAACATTGTCA---ATTGTATCAG-AGCTCT 34641854 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || | || ||||| ||||| || || || || |||||||||||||| Sbjct 34641853 CTACCTCCAAGGTAATTGTCTTTCCAGTAAGCGTCTTGACAAAGATTTGCAT 34641802 Score = 105 bits (116), Expect = 5e-18 Identities = 168/233 (72%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||||| || |||| |||||| ||| |||||||||||||||||||||||| Sbjct 34079580 CCACCCCTCAGCCTCAATACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCTGCC 34079521 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | |||| ||||| ||||| || |||||||||| | ||||||||| || Sbjct 34079520 AA-GGTCCTTCCGTCCTCCAACTGCTTCCCAGCAAATATCAACCTCTGCTGATCTGGAGG 34079462 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTA--ATGGAACTC-ACACTATCAGTAGAT-T 34075 | | ||| ||||| || ||| |||| || | || | |||| | || | | Sbjct 34079461 AATTCCCTCCTTGTCTTGGATCTTTGCCTTAACATTG---TCGATCGTATC-GGAGCTCT 34079406 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 | ||| | || ||||| ||||| || || || || ||||||||||||||| Sbjct 34079405 CTACTTCCAAGGTGATTGTCTTTCCAGTAAGGGTCTTGACAAAGATTTGCATT 34079353 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||||| ||| |||| ||| || ||| ||||||||||| |||||||| ||| Sbjct 34407442 CCACCCCTCAGCCTCAGTACCAAATGGAGTGTGGATTCCTTCTGAATATTGTAATCAGCC 34407383 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || |||| | | || ||||| |||||||| ||||| |||| | |||||| ||| || Sbjct 34407382 AA-TGTCCTTCCATCCTCCAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGG 34407324 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTC 34076 | | || ||||| |||||| ||| | || | | |||| | | ||| Sbjct 34407323 GATTCCTTCCTTGTCTTGGATTTTTGCCTTCACATTGTCA---ATTGTATCCGAACTTTC 34407267 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || ||||| || || || || || || |||||||||||||| Sbjct 34407266 TACTTCAAGGGTGATTGTCTTCCCTGTGAGGGTCTTGACAAAGATTTGCAT 34407216 >seq3 Length=50312079 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||| || || ||||||||||| ||| ||||| |||||||||||||| ||| Sbjct 6143950 CCACCTCTCAACCTCAATACCAGATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGCC 6143891 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 ||| ||| || | || ||||||||||| || ||||| |||| | |||||| || | Sbjct 6143890 AAT-GTC-CTACCATCCTCCAATTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGG 6143833 Query 34019 GCACGCTCTCTTTGTCCATAATTTT---TTGCTTAATGGAACTCACACTATCAGTAGATT 34075 | | | ||| ||||| |||||| || | | || | | |||||| | || Sbjct 6143832 GAATTCCCTCCTTGTCTTGAATTTTCGCTTTCACATTGTCA---ATTGTATCAGAACTTT 6143776 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | ||| | || || || || || || || || || |||||||||||||| Sbjct 6143775 CTACTTCAAGGGTAATCGTCTTCCCAGTGAGAGTCTTAACAAAGATTTGCAT 6143724 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/236 (68%), Gaps = 18/236 (8%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| || |||||||||||||| || |||||| ||||| ||||| || ||| Sbjct 6144178 CCTCCACGCAGACGAAGCACCAGATGAAGGGTAGACTCCTTTTGAATATTGTAGTCGGCC 6144119 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | || | || |||| ||||| || |||||||| || | |||||| || || Sbjct 6144118 AGTGTGCGGCCATCCTCCAGCTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGG 6144059 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---G 34077 | || || |||||| | | | ||||||| ||||| ||||| | | || | Sbjct 6144058 ATGCCTTCCTTGTCC-TGAATCTTTGCTT--------TCACATTATCAATGGTGTCTGAG 6144008 Query 34078 CATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || ||| || || || || || || || || |||||||| || ||||| Sbjct 6144007 CTCTCAACCTCAAGTGTGATAGTCTTCCCAGTCAGAGTCTTCACAAATATCTGCAT 6143952 >seq1 Length=51465339 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/116 (79%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || ||||| || ||||| || ||||||||||||||||||||| | Sbjct 45561472 ACCACCACGCAGACGAAGCACAAGGTGAAGTGTAGACTCCTTCTGAATGTTGTAATCAG- 45561414 Query 33960 CAATTGTC--GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| ||| || |||| ||||||||||| || ||||| |||| ||||||||||| Sbjct 45561413 CAAGAGTCCTGC-CGTCTTCCAATTGCTTTCCAGCAAAGATCAAACGCTGCTGATC 45561359 >seq4503 Length=10536 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/92 (83%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 114333 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAAC 114390 ||||||||| |||||||||||||||| |||||||| |||| || || ||| |||||| Sbjct 1049 TCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAAAAAG-AATATCCGAGGAAC 1107 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 1108 CGTAACTGATTTAATGAGCCATTCGCGGTTTC 1139 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/92 (83%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 115530 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAAC 115587 ||||||||| |||||||||||||||| |||||||| |||| || || ||| |||||| Sbjct 1049 TCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAAAAAG-AATATCCGAGGAAC 1107 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 1108 CGTAACTGATTTAATGAGCCATTCGCGGTTTC 1139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397039046030452