Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6 141 2e-28 seq3 123 6e-23 seq2 114 3e-20 seq1 114 3e-20 >seq6 Length=36610139 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| ||||| |||| ||| || || ||||| || ||||| || Sbjct 34080036 CCACCACGAAGACGAAGAACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 34079977 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| || || || || ||||| || || |||| |||||||||| |||| Sbjct 34079976 AGGGTTCTTCCATCCTCCAACTGCTTTCCAGCAAAAATCAAACGCTGTTGATCTGGTGGG 34079917 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 ||||| ||||| |||||||||||||| |||||||| || || | ||| |||| || Sbjct 34079916 ATTCCCTCTTTGTCCTGGATTTTCGCCTTCACGTTATCAATTGTATCTGAGCTC---TCA 34079860 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| ||||||| ||||| || || || ||||| Sbjct 34079859 ACCTCCAAGGTGATGGTCTTGCCGGTCAATGTCTTCACAAAGATTTGCAT 34079810 Score = 134 bits (148), Expect = 3e-26 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| ||| ||||| ||||| || ||||| || Sbjct 34642484 CCACCACGTAGACGAAGAACAAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCC 34642425 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| || || || || ||||| || || |||| |||||||||| |||| Sbjct 34642424 AGGGTTCTTCCATCCTCCAACTGCTTTCCAGCAAAAATCAAACGCTGTTGATCTGGTGGG 34642365 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 ||||| ||||| |||||||||||||| ||||| || || || | ||| |||| || Sbjct 34642364 ATTCCCTCTTTGTCCTGGATTTTCGCCTTCACATTATCAATTGTATCTGAGCTC---TCA 34642308 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | ||||| ||||| || |||| ||||| || || || |||||| Sbjct 34642307 ACCTCCAAGGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATTTGCATT 34642257 Score = 129 bits (142), Expect = 1e-24 Identities = 170/233 (73%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| || |||||| ||||| || |||||||| Sbjct 34407898 CCACCACGAAGACGAAGGACAAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCGGCC 34407839 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 | || | ||| || |||| || ||||| || ||||||| | ||| ||| ||||| Sbjct 34407838 AAAGTCCTTCCATCCTCTAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGA---TCTGGA 34407782 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA---T 288420 ||| || ||||| ||||| || ||||| ||||| || || || | || ||| | Sbjct 34407781 GGGATGCCCTCTTTGTCCTGAATCTTCGCCTTCACATTATCAATCGTGTC---CGAGCTT 34407725 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || |||||||||||||| |||| |||||||| || |||||||| Sbjct 34407724 TCAACTTCTAGAGTGATCGTCTTCCCAGTCAACGTCTTGACAAAGATCTGCAT 34407672 Score = 113 bits (124), Expect = 1e-19 Identities = 167/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || | ||||| || ||| || |||||||| ||||| || Sbjct 34079353 TCCACCACGTAGACGGAGCACCAAATGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGC 34079294 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| |||||||| | || || || || || || || | ||| || ||||| Sbjct 34079293 AAGGGTGCGACCGTCTTCCAGCTGCTTGCCAGCAAAAATGAGTCTCTGCTGG---TCTGG 34079237 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGA 288419 | || || || || |||||||| || ||||| || || || |||| || ||| Sbjct 34079236 GGGGATGCCCTCCTTGTCCTGGATCTTAGCTTTGACATTATCAATAGTGTCAGAGCT--- 34079180 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| ||||| || ||||| ||||| || || || ||||| || ||||||||||| Sbjct 34079179 TTCAACTTCTAGGGTGATTGTCTTGCCAGTAAGTGTCTTAACAAATATCTGCAT 34079126 Score = 107 bits (118), Expect = 5e-18 Identities = 169/238 (71%), Gaps = 13/238 (5%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || | ||||| ||| ||| || || ||||| || | Sbjct 34079128 CATG-CCACCACGTAGACGAAGAACCAAATGAAGGGTGGATTCCTTCTGAATATTGTAAT 34079070 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || | ||||| || || || | ||||| || || ||||| || | ||| ||| | Sbjct 34079069 CAGCTAAGGTGCGACCATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGA---T 34079013 Query 288362 CTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GC 288415 |||| ||| ||||| || || || || || || || || || || || | || || Sbjct 34079012 CTGGAGGGATACCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCAATGGTGTCTGAGC 34078953 Query 288416 TCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | |||||| || || ||||| ||||||||||| |||||||| || || |||||||| Sbjct 34078952 T---TTCTACCTCAAGAGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 34078898 Score = 107 bits (118), Expect = 5e-18 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | || || ||||| | ||| | ||| ||| || || ||||| || || || Sbjct 34407443 TCCACCCCTCAGCCTCAGTACCAAATGGAGTGTGGATTCCTTCTGAATATTGTAATCAGC 34407384 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || | ||| || || || || || || || || |||| | ||| || || Sbjct 34407383 CAATGTCCTTCCATCCTCCAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGG 34407324 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA---TTC 288422 ||||||||| || || |||||||| || ||||| || || || | ||| ||| ||| Sbjct 34407323 GATTCCTTCCTTGTCTTGGATTTTTGCCTTCACATTGTCAATTGTATC---CGAACTTTC 34407267 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| || ||||| |||||||| || || |||||||| || || ||||| Sbjct 34407266 TACTTCAAGGGTGATTGTCTTCCCTGTGAGGGTCTTGACAAAGATTTGCAT 34407216 Score = 104 bits (114), Expect = 6e-17 Identities = 171/243 (70%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||||||||| | ||| || | ||||| ||| ||| || || |||||||||| Sbjct 34406762 CATG-CCACCGCGGAGACGAAGAACCAAATGAAGGGTGGATTCCTTCTGAATATTATAGT 34406704 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || | || | ||| || || | ||||| || || ||||| || | ||| ||| Sbjct 34406703 CAGCTAAAGTCCTTCCATCCTCGAGCTGTTTGCCCGCAAAGATAAGCCTCTGCTGATCGG 34406644 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCG 288418 ||||| ||||| || || || || || || || || || || || | || ||| Sbjct 34406643 GAGGGATGCCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCT-- 34406586 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478 ||| || || || || || ||||| ||||| ||||| || || || ||||||| | ||| Sbjct 34406585 -TTCAACCTCAAGGGTTATGGTCTTTCCGGTAAGAGTTTTCACAAAGATCTGCA-TCTGT 34406528 Query 288479 TAT 288481 ||| Sbjct 34406527 TAT 34406525 Score = 93.3 bits (102), Expect = 1e-13 Identities = 139/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || ||||| ||||| || || || || || || || | || || || || || Sbjct 34407635 TTCTTTCTGAATATTGTAGTCAGCAAGGGTACGACCATCCTCAAGCTGCTTACCAGCAAA 34407576 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | ||| || |||||| |||||||||||||| ||||| || ||||| || Sbjct 34407575 AATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCTTTATCCTGAATTTTTGCCTTCACATT 34407516 Query 288402 TTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || | || |||| || || || | || || ||||| || |||| ||||| Sbjct 34407515 ATCAATTGTGTCTGAGCTC---TCCACCTCCAAAGTAATTGTCTTTCCTGTCAATGTCTT 34407459 Query 288459 GACGAATATCTGCATT 288474 || || ||||||||| Sbjct 34407458 CACAAAAATCTGCATT 34407443 >seq3 Length=50312079 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || ||||||| || || ||||| ||||| |||||||| Sbjct 6144178 CCTCCACGCAGACGAAGCACCAGATGAAGGGTAGACTCCTTTTGAATATTGTAGTCGGCC 6144119 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || ||||| || || || || | ||| || |||| Sbjct 6144118 AGTGTGCGGCCATCCTCCAGCTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGG 6144059 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| || ||||| || || |||||||| || || || | || |||| || Sbjct 6144058 ATGCCTTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATGGTGTCTGAGCTC---TCA 6144002 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| |||||||| ||||||||||| || ||||||||||| Sbjct 6144001 ACCTCAAGTGTGATAGTCTTCCCAGTCAGAGTCTTCACAAATATCTGCAT 6143952 Score = 105 bits (116), Expect = 2e-17 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 288264 TACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTC 288323 ||| ||||||| ||| ||| ||||| || || || || || | || | || || || Sbjct 6143933 TACCAGATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGCCAATGTCCTACCATCCTC 6143874 Query 288324 TAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATC 288380 ||||| || || || || |||| | ||| || |||||| ||||| || || || Sbjct 6143873 CAATTGCTTACCAGCAAAAATCAACCTCTGCTGG---TCTGGGGGAATTCCCTCCTTGTC 6143817 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 || |||||||||||||| || || || | ||| ||||||||| || || ||||| Sbjct 6143816 TTGAATTTTCGCTTTCACATTGTCAATTGTATCAGAACTTTCTACTTCAAGGGTAATCGT 6143757 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| || |||||||| || || || ||||| Sbjct 6143756 CTTCCCAGTGAGAGTCTTAACAAAGATTTGCAT 6143724 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/197 (71%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || || || | || ||||| || |||| || || || || ||| Sbjct 6143230 TCCTTCTGAATGTTGTAATCAGCTAAGGTCCGTCCATCCTCTAGCTGCTTACCAGCAAAG 6143171 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| ||| ||||| ||| ||||| || || || || |||||||| || Sbjct 6143170 ATGAGCCTCTGCTGA---TCTGGAGGGATACCTTCCTTGTCTTGAATCTTCGCTTTGACA 6143114 Query 288400 TTTTCTATAGAATCGCTCGA---TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || |||| || ||| ||| || ||||| ||||| ||||| || || ||||| Sbjct 6143113 TTGTCAATAGTGTC---CGAACTTTCAACCTCGAGGGTGATTGTCTTGCCAGTAAGAGTT 6143057 Query 288457 TTGACGAATATCTGCAT 288473 || || ||||||||||| Sbjct 6143056 TTCACAAATATCTGCAT 6143040 Score = 91.5 bits (100), Expect = 3e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | ||| || || || | || || || || || || ||||| || Sbjct 6144406 CCACCGCGGAGACGAAGAACAAGGTGCAGGGTAGACTCCTTCTGAATGTTGTAGTCCGCT 6144347 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||| ||||| || || ||||| || || |||| | ||| ||| ||| Sbjct 6144346 AAGGTCCTTCCATCTTCCAACTGCTTTCCAGCAAAAATCAACCTCTGCTGATCTGGTGGA 6144287 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 ||||| || ||||| ||||| || || |||||||| || || | || |||| || Sbjct 6144286 ATTCCCTCCTTATCTTGGATCTTAGCCTTCACGTTATCGATGGTGTCTGAGCTC---TCC 6144230 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| || |||| ||||| || || || ||||| Sbjct 6144229 ACCTCCAAGGTGATTGTCTTGCCAGTCAATGTCTTTACAAAGATTTGCAT 6144180 >seq2 Length=43913520 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || ||||| | || |||||| || || || || || || Sbjct 39747804 CCTCCACGGAGACGGAGGACCAGATGGAGTGTTGATTCTTTCTGAATGTTGTAATCAGCT 39747745 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | |||||| || | || || || || ||||| || | ||| || |||| Sbjct 39747744 AGGGTTCTTCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 39747685 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| ||||||||||| || |||||||| || || |||| ||| |||| || Sbjct 39747684 ATCCCTTCCTTATCCTGGATCTTAGCTTTCACATTGTCAATAGTATCCGAGCTC---TCA 39747628 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || |||| ||||||||||| |||||||| Sbjct 39747627 ACCTCAAGGGTAATAGTCTTTCCTGTCAAGGTCTTGACGAAAATCTGCAT 39747578 Score = 113 bits (124), Expect = 1e-19 Identities = 166/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | | || | |||| ||| || || ||||||||||| || || Sbjct 39748716 CCACCACGGAGACGCAAGACCAAGTGAAGGGTGGACTCCTTCTGGATATTATAATCAGCC 39748657 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || || | ||| ||||| || ||||||| | ||| ||| ||||| Sbjct 39748656 AGAGTCCTACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGA---TCTGGA 39748600 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| || |||||||| ||||| || || || || || | ||| | | ||| Sbjct 39748599 GGAATTCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGTATC--TGAACTCT 39748542 Query 288424 --ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| |||||||||||||| ||||| |||||||| Sbjct 39748541 CCACCTCTAGGGTTATAGTCTTGCCGGTCAGAGTCTTCACGAAAATCTGCAT 39748490 Score = 107 bits (118), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || || ||||| | ||| || || ||||| || ||||| || Sbjct 39747348 CCCCCGCGGAGACGGAGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCC 39747289 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || ||||| | || || || ||||| || ||||| || ||| | || Sbjct 39747288 AGAGTCCTGCCATCTTCGAGCTGCTTACCAGCGAAAATAAGACGTTGCTGATCAGGAGGA 39747229 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || ||||| ||||| || || | || ||| || Sbjct 39747228 ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATTGTGTCAGAACTTTCCACC 39747169 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| ||||||||||| || || || |||||||| Sbjct 39747168 TCCAAGGTGATGGTCTTTCCGGTCAGAGTTTTCACAAAGATCTGCAT 39747122 Score = 98.7 bits (108), Expect = 2e-15 Identities = 154/218 (71%), Gaps = 12/218 (6%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || || |||| ||| ||| || || ||||| || || || || || | |||||| Sbjct 39747561 AGCACAAGGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAGAGTCCTTCCGTCC 39747502 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || ||||| || ||||||| | ||| || || ||| || || || ||| Sbjct 39747501 TCGAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGG---TCCGGGGGAATGCCCTCCTTA 39747445 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTG 288435 ||||| || || || || || || || || | || |||| || ||||| || ||| Sbjct 39747444 TCCTGAATCTTGGCCTTGACATTGTCAATTGTGTCTGAGCTC---TCGACTTCCAGAGTG 39747388 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| ||||||| ||||| ||||| |||||||| Sbjct 39747387 ATCGTCTTTCCGGTCAACGTCTTAACGAAGATCTGCAT 39747350 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || || || || || || || || || || |||| ||| || ||||| || ||| Sbjct 30554244 CCTTCCTTGTCTTGAATCTTGGCCTTGACATTATCGATAGTATCACTGGATTCAACCTCG 30554185 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||||||||| || || || ||||| ||||||||| Sbjct 30554184 AGGGTGATTGTCTTCCCGGTTAGGGTTTTCACGAAGATCTGCATT 30554140 >seq1 Length=51465339 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| || || || || || || || || || Sbjct 45561471 CCACCACGCAGACGAAGCACAAGGTGAAGTGTAGACTCCTTCTGAATGTTGTAATCAGCA 45561412 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | |||||||| ||||| ||||| || ||||||| |||||| ||| |||| Sbjct 45561411 AGAGTCCTGCCGTCTTCCAATTGCTTTCCAGCAAAGATCAAACGCTGCTGATCTGGTGGG 45561352 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 |||||||| || ||||| || || || || || || || || | || |||| || Sbjct 45561351 ATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTC---TCA 45561295 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| ||||||| |||||||| || |||||||| Sbjct 45561294 ACCTCAAGAGTAATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 45561245 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| |||||||| || || | |||||||| | ||| || || |||||| Sbjct 45560523 TCCTTCTGGATATTGTAGTCGGCAAGGGTCCTGCCGTCTTCAAGTTGCTTGCCAGCGAAG 45560464 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| || |||||| || ||||| |||||||||||||| || || ||| Sbjct 45560463 ATCAACCTCTGCTGG---TCTGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTGACG 45560407 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| ||| || || || ||||| ||||| ||||| || || || Sbjct 45560406 TTGTCGATTGTGTCGGAGCTTTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTTTTC 45560347 Query 288460 ACGAATATCTGCAT 288473 || || || ||||| Sbjct 45560346 ACAAAGATTTGCAT 45560333 Score = 102 bits (112), Expect = 2e-16 Identities = 164/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || || | || | ||| || || ||||| |||||||| || Sbjct 45561015 CCACCACGGAGCCTGAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCAGCA 45560956 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| || || | || || || || ||||||| | ||| || |||||| Sbjct 45560955 AGGGTCCTTCCATCCTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGG---TCTGGG 45560899 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || ||||| || |||||||| || || || || || || || | ||| |||| Sbjct 45560898 GGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTATCAGAGCTC--- 45560842 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| || |||| ||||||||||| |||||||| Sbjct 45560841 TCGACCTCAAGGGTGATTGTCTTTCCTGTCAAGGTCTTGACGAAGATCTGCAT 45560789 Score = 98.7 bits (108), Expect = 2e-15 Identities = 163/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || || | || | || || || ||||| || |||||||| Sbjct 45560787 CCACCACGGAGCCTGAGGACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCA 45560728 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || || | || || || || ||||||| | ||| || |||||| Sbjct 45560727 AGGGTCCTGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGG---TCTGGG 45560671 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || || || || |||||||| || || || || || || || | || |||| Sbjct 45560670 GGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTC--- 45560614 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||| |||||||| |||| |||||||||||| |||||||| Sbjct 45560613 TCGACTTCAAGGGTGATGGTCTTCCCTGTCAAAGTCTTGACGAAGATCTGCAT 45560561 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/197 (71%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || || || || || | ||| || || | || || || || ||| Sbjct 45561663 TCCTTCTGGATATTGTAATCTGCAAGGGTCCTTCCATCCTCAAGCTGCTTACCAGCAAAG 45561604 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| ||| ||||| || ||||| |||||||| || || || ||||| Sbjct 45561603 ATCAACCTCTGCTGA---TCTGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTCACA 45561547 Query 288400 TTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | ||| ||| || ||||| | ||||| ||||| || ||||||||| Sbjct 45561546 TTATCAATGGTGTCGGAGCTC---TCCACTTCCAAGGTGATAGTCTTTCCAGTCAGAGTC 45561490 Query 288457 TTGACGAATATCTGCAT 288473 || || || |||||||| Sbjct 45561489 TTAACAAAGATCTGCAT 45561473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179581458282028