Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3 136 5e-27 seq1 107 2e-18 >seq3 Length=50312079 Score = 136 bits (150), Expect = 5e-27 Identities = 163/221 (74%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 || |||||||| || | || || || ||||||||||| || ||| ||||| || ||| Sbjct 34659045 TGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGAAAGTCAATCCGGGCATAAGCCCC 34658986 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 | |||||||| ||| |||||||| || || |||||||| || || || |||||||| Sbjct 34658985 CTCTTCTTCAGCCAAAAAATCGCGCAGAAGCTCCCCGAGAAAAAAATCCCTTCCACACAA 34658926 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCC 126238 || ||||||| | | ||| ||||| || | | | |||| |||| |||||||| Sbjct 34658925 GCAAACGCAATAATCCTCTCCGCAAACGA---CTCCCCTCCATCAATCCACCTCATCGCC 34658869 Query 126239 CACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 |||| ||||| ||||||| |||||| | |||| ||||| Sbjct 34658868 CACTTGGCCTTCTTCTCGACACACGGAATCGTCTCAATCGC 34658828 >seq1 Length=51465339 Score = 107 bits (118), Expect = 2e-18 Identities = 153/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 ||||| || || || || || ||||||||| || || ||| ||||| || || | |||| Sbjct 39365715 CCCTCATCTCGCGAAATCAGCTCATTCGAGTAGGTCAATCCAGGCATCAGCCCTCTCTTC 39365774 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 |||||||| || | ||| ||||| |||||||| || || || |||||||| || ||| Sbjct 39365775 TTCAACCAAAACACCGCGCAAAAACTCCCCGAGAAAAAAATCCCTTCCACACAAGCAAAC 39365834 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | | | ||| || | | | | | | |||| |||| ||| |||||| | | Sbjct 39365835 GCCACAATCCTCTCCGC---GAAACACTCCCCTCCATCAATCCACCTCAGCGCCCAATTC 39365891 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||| |||||| |||||| | |||| ||||| Sbjct 39365892 GCCTTCCTCTCGACACACGGAATCGTCTCAATCGC 39365926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597317564644080