Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq7 105 7e-18 seq3 105 7e-18 seq6 102 8e-17 seq2 102 8e-17 >seq1 Length=51465339 Score = 114 bits (126), Expect = 1e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||| | || | ||||||||| ||||| |||| Sbjct 30446260 GATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGTTTTCCGGCG 30446319 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || || || ||||| ||||| || ||||||||||| |||||| ||| | | Sbjct 30446320 AAGATGAGGCGTTGCTGGTCGGGAGGGATGCCTTCTTTGTCTTGGATTTTGGCTTTGACA 30446379 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| || |||||||| | || | ||||| || || || ||||| Sbjct 30446380 TTG-TCGATGGTGTCGGAGGATTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTTTT 30446438 Query 138600 TACAAAAATCTGCAT 138614 ||| || |||||||| Sbjct 30446439 TACGAAGATCTGCAT 30446453 >seq7 Length=36358036 Score = 105 bits (116), Expect = 7e-18 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || | ||||||||| || || |||| Sbjct 14364742 GACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTGCCGGCG 14364683 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538 |||| || ||||| |||||||| || || ||||||||||| ||| | || | ||| Sbjct 14364682 AAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCTTTGTC-TTGAATCTTGGCTTTGAC 14364624 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||||| || |||||||| | || | ||||| || || || |||| Sbjct 14364623 ATTG-TCGATTGTGTCGGAGGATTCCACCTCCAGGGTGATAGTTTTGCCGGTGAGGGTTT 14364565 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 14364564 TCACGAAGATCTGCAT 14364549 >seq3 Length=50312079 Score = 105 bits (116), Expect = 7e-18 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || || | ||||| ||| ||||| | | | |||||||| ||||||||||| || ||| Sbjct 6143266 CCCCCACGTAGACGCAGAACCAAATGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGCT 6143207 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||| || || ||||| | | |||| || | ||| || || ||||| Sbjct 6143206 -AAGGTCCGTCCATCCTCTAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGATCTGGAGG 6143148 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCC 138564 |||||||| ||||| ||| | || | ||| |||| || | ||||| | || Sbjct 6143147 GATACCTTCCTTGTC-TTGAATCTTCGCTTTGACATTG-TCAATAGTGTCCGAACTTTCA 6143090 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| || | || || ||||| |||||||| ||||| |||||||| Sbjct 6143089 ACCTCGAGGGTGATTGTCTTGCCAGTAAGAGTTTTCACAAATATCTGCAT 6143040 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || | ||| | | | |||||||||||||| ||||||||| | Sbjct 6144178 CCTCCACGCAGACGAAGCACCAGATGAAGGGTAGACTCCTTTTGAATATTGTAGTCGGCC 6144119 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || || | | | || || | ||| ||||| || || Sbjct 6144118 AGTGTGCGGCCATCCTCCAGCTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGG 6144059 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| | |||| ||| | | || | |||||| | ||| || Sbjct 6144058 ATGCCTTCCTTGTCC-TGAATCTTTGCTTTCACATTATCAATGGTGTCTGAGCTCTCAAC 6144000 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || ||||||||||| || ||||| ||||||||| Sbjct 6143999 CTCAAGTGTGATAGTCTTCCCAGTCAGAGTCTTCACAAATATCTGCATG 6143951 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| ||| ||||| | | | |||||||| ||||||||||| ||| | Sbjct 6143494 CCCCCACGTAGACGCAGAACCAAATGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGCC 6143435 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || |||||||| | | |||| || | ||| ||||| || || Sbjct 6143434 AAGGTCCGTCCATCCTCTAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 6143375 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || ||| | | || | ||| || | || || Sbjct 6143374 ATACCCTCCTTGTCCTGGATCTTAGCTTTGACATTATCAATGGTATCAGAGCTTTCGACT 6143315 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| || || ||||||||||||||||| Sbjct 6143314 TCTAGAGTGATAGTCTTGCCAGTAAGTGTCTTTACAAAAATCTGCAT 6143268 >seq6 Length=36610139 Score = 102 bits (112), Expect = 8e-17 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GC 138445 ||| || || | ||| | ||| ||||| | | | || ||||| ||||| ||||| || || Sbjct 34641573 GCCACCACGTAGACGAAGAACCAAATGAAGGGTCGATTCCTTCTGAATATTGTAATCAGC 34641514 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | | ||||| ||||| || |||||||| | | |||| || | ||| || || |||| Sbjct 34641513 TAAG-GTACGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCTGGAG 34641455 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTC 138563 | |||||||||||||| ||| | || | || |||| || | |||||| | || Sbjct 34641454 GGATACCTTCTTTGTC-TTGAATCTTAGCCTTGACATTG-TCAATGGTGTCCGAGCTTTC 34641397 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | || || ||||| |||||||| ||||| |||||||| Sbjct 34641396 TACCTCAAGAGTGATGGTCTTCCCAGTAAGAGTTTTCACAAAGATCTGCAT 34641346 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | | ||||| |||||||| |||||||| Sbjct 34079808 CCCCCACGGAGACGGAGCACAAGATGGAGGGTAGACTCTTTTTGAATATTGTAGTCTGCA 34079749 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || |||||||| || | | | || || | ||| ||||| || || Sbjct 34079748 AGTGTGCGGCCATCTTCAAGTTGTTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGG 34079689 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| | |||| ||| | | || | ||||||| |||||| Sbjct 34079688 ATGCCCTCTTTGTCT-TGAATCTTTGCTTTGACATTATCAATAGTGTCGGAGCTCTCCAC 34079630 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | ||| | || || || |||| ||| || |||||||||||||| Sbjct 34079629 CTCTAGCGTGATGGTCTTTCCTGTCAAAGTCTTCACAAAAATCTGCAT 34079582 >seq2 Length=43913520 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || | |||||| || || || |||| Sbjct 31249770 GACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCCAGCTGCTTTCCGGCG 31249711 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||||||||| || ||||||||||| ||| || || | | Sbjct 31249710 AAGATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCTTTGTCCTGGATCTTGGCCTTGACA 31249651 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||||| ||||||| || | || || || || || ||||| Sbjct 31249650 TTG-TCGATGGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTT 31249592 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 31249591 CACGAAGATCTGCAT 31249577 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || ||||||||||| || ||| | || | || ||||| || ||||| | Sbjct 39747315 GACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCA-TCTTCGAGCTGCTTACCAGC 39747257 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 | || ||||| || || || ||||| || ||||| ||||| ||| || ||| | Sbjct 39747256 GAAAATAAGACGTTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTGAC 39747197 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||| | |||||||| | || | || || || ||||||||||| Sbjct 39747196 GTTGTCGATTGTGTCAGAACTTTCCACCTCCAAGGTGATGGTCTTTCCGGTCAGAGTTTT 39747137 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 39747136 CACAAAGATCTGCAT 39747122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496232462970720