Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 125 6e-24 seq2 122 8e-23 seq3 111 1e-19 seq7 109 5e-19 seq15 95.1 1e-14 seq6 86.0 6e-12 seq4 82.4 7e-11 >seq1 Length=51465339 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | || || || || || |||||||| ||||| || || ||| Sbjct 30446227 CCGCCGCGGAGGCGGAGGACGAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGCT 30446286 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| | || || | |||||||| ||| | || | ||||||||||| || || Sbjct 30446287 AGGGTTCTGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCGGGAGGG 30446346 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||||||||| ||||| ||||| ||||| || | ||||||||| || || || Sbjct 30446347 ATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTGTCGATGGTGTCGGAGGATTCCACC 30446406 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||||||||||| || |||||||| || || ||||| Sbjct 30446407 TCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTTACGAAGATCTGCAT 30446453 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || ||||| ||||| |||||||| || ||| | ||| | || || | ||| Sbjct 45560536 ATGGAGAGTTGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCTGCCGTCTTCAAGTTG 45560477 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 || || ||| | ||||| | |||||||| || ||||||||||| ||||| || ||||| Sbjct 45560476 CTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATTTT 45560417 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 |||| || | || | |||||||| ||||| || || || | || || |||| Sbjct 45560416 GGCCTTGA-CGTTGTCGATTGTGTCGGAGCTTTCGACCTCAAGGGTGATGGTCTTTCCGG 45560358 Query 45316 TTAGAGTTTTTACAAAAATTTGCATC 45341 | || ||||| ||||| ||||||||| Sbjct 45560357 TGAGGGTTTTCACAAAGATTTGCATC 45560332 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || || || ||||| | | ||| ||||| || ||||||||||| |||||||| ||||| Sbjct 45561246 ATACCACCACGGAGACGGAGCACAAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCA 45561187 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | ||| | ||| ||||| || || || || | ||||| | |||||||| || Sbjct 45561186 GCT-AGGGTCCTGCCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGG 45561128 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 || || ||||| || || ||||| || |||| || | |||||| || ||| Sbjct 45561127 AGGGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTCTC 45561068 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| || || ||||| | || || ||||| || ||||| Sbjct 45561067 AACCTCAAGAGTAATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 45561017 >seq2 Length=43913520 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | || || || || || || ||||| ||||| || || ||| Sbjct 31249803 CCGCCGCGGAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCT 31249744 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| | || |||| || ||||| ||| | || | || ||||||||||| || Sbjct 31249743 AGGGTTCTGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGG 31249684 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||||||||| || || || || |||| || | |||||| ||||||||||| Sbjct 31249683 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACC 31249624 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | || ||||||||||| ||||| || || || ||||| Sbjct 31249623 TCGAGAGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 31249577 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | ||| || || || || |||||||| || ||||| ||||| Sbjct 39747579 ATCCCTCCACGAAGACGGAGCACAAGGTGAAGGGTGGATTCCTTCTGAATATTGTAATCA 39747520 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || || | || ||||| || | ||||||| ||||||||||| Sbjct 39747519 GCCAGAGTCCTTCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGG 39747460 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || ||||| ||||| || |||| || | ||||| || |||| Sbjct 39747459 GGAATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATTGTGTCTGAGCTCTCG 39747400 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | ||| || ||||| | || || || || || ||||| Sbjct 39747399 ACTTCCAGAGTGATCGTCTTTCCGGTCAACGTCTTAACGAAGATCTGCAT 39747350 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | ||| || | || || || || ||||| |||||||||||||| Sbjct 39748716 CCACCACGGAGACGCAAGACCAAGTGAAGGGTGGACTCCTTCTGGATATTATAATCAGCC 39748657 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || ||| || | ||| ||||| || | ||||| | ||||| || || ||| Sbjct 39748656 AGAGTCCTACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 39748597 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || || || || || || | || | ||| || ||| ||| || Sbjct 39748596 ATTCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGTATCTGAACTCTCCACC 39748537 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || |||||||| ||||| || || ||||| ||||| Sbjct 39748536 TCTAGGGTTATAGTCTTGCCGGTCAGAGTCTTCACGAAAATCTGCAT 39748490 >seq3 Length=50312079 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA 45184 |||||| || ||||| || || ||||||||||| || || ||||| | || || Sbjct 6143939 CCTCAATACCAGATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGCCAATGTCCTACC 6143880 Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||||||| || || || | ||||| | |||||||| || ||||| || || || Sbjct 6143879 ATCCTCCAATTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTT 6143820 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||||||||| ||| | || | || || ||| || ||||| || |||| Sbjct 6143819 GTCTTGAATTTTCGCTTTCACATTGTCAATTGTATCAGAACTTTCTACTTCAAGGGTAAT 6143760 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || ||||| || ||||| |||||||| Sbjct 6143759 CGTCTTCCCAGTGAGAGTCTTAACAAAGATTTGCAT 6143724 >seq7 Length=36358036 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | || || || || || || ||||| ||||| || || ||| Sbjct 14364775 CCGCCGCGGAGGCGGAGAACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCT 14364716 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| | || || | || || || ||| | || | || |||||||||||||| Sbjct 14364715 AGGGTTCTGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 14364656 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||||||||| |||||||| || ||||| || | |||||||| || || || Sbjct 14364655 ATGCCTTCTTTGTCTTGAATCTTGGCTTTGACATTGTCGATTGTGTCGGAGGATTCCACC 14364596 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||||||||||| || ||||| || || || |||||| Sbjct 14364595 TCCAGGGTGATAGTTTTGCCGGTGAGGGTTTTCACGAAGATCTGCATC 14364548 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | || | ||| || ||||||||||| |||||||||||| Sbjct 16384073 ATCCCTCCTCTGAGACGGAGGACCAAATGAAGGGTTGATTCCTTCCTGATATTATAATCA 16384132 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | |||||| || || | ||||| | |||||| || | Sbjct 16384133 TCCAACGTGCAATTATCTTCTAGTTGTTTCCCAGCAAAGATCAACCTTTGCTGATCTCGA 16384192 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || | | ||| || |||| ||| | |||||||| | | Sbjct 16384193 GGGATCCCCTCCTTGTACTCAATCTTAGTCTTGACATTGTCTGCAGTGTCGGAGCTTTTG 16384252 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||||| || ||||| || |||||||| || |||||||||||| Sbjct 16384253 ACCTCCAGAGTAATAGTCTTGCCCGTAAGAGTTTTCACGAAAATTTGCATC 16384303 >seq15 Length=668940 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| ||||| | || || ||||| ||||| || ||||| Sbjct 334920 ATGCCACCACGAAGACGCAACACAAGATGGTGTGTGGACTCCTTCTGGATGTTGTAATCA 334861 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || |||||||| || || || | ||||| || |||||||| ||| Sbjct 334860 GCCAGGGTCCTGCCGTCCTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGC 334801 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || || || || || || | || | || | ||| || || ||| Sbjct 334800 GGAATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGTTGTCAATGGTATCTGAGCTCTC 334742 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||||| || || || || | || || ||||| || ||||| Sbjct 334741 AACTTCGAGAGTAATAGTCTTCCCTGTCAAGGTCTTGACAAAGATCTGCAT 334691 >seq6 Length=36610139 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | ||||||| || | ||| || || |||||||| || ||||| ||||| Sbjct 34407445 ATTCCACCCCTCAGCCTCAGTACCAAATGGAGTGTGGATTCCTTCTGAATATTGTAATCA 34407386 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||| || || || || | ||||| | ||||||||||| Sbjct 34407385 GCCAATGTCCTTCCATCCTCCAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGG 34407326 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || ||||| |||||| || | || | || || ||| || Sbjct 34407325 GGGATTCCTTCCTTGTCTTGGATTTTTGCCTTCACATTGTCAATTGTATCCGAACTTTCT 34407266 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || || || || || || || ||||| |||||||| Sbjct 34407265 ACTTCAAGGGTGATTGTCTTCCCTGTGAGGGTCTTGACAAAGATTTGCAT 34407216 >seq4 Length=35924511 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/203 (69%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| ||||||||||| || |||| | | || | ||| || || Sbjct 33611109 TGAAGTGTTGACTCCTTTTGGATGTTGAAATCCGTTAGTGTACGACCATCCTCATGCTGC 33611168 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| ||||||||| | |||||| | ||||| ||||| |||||||| || || Sbjct 33611169 TTACCTGCAAATATCAATCTCTACTGGTCTAGGGGAATACCTTCCTTATCTTGGATCTTA 33611228 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| ||| | |||||||| ||| || || | ||| || || ||||| Sbjct 33611229 GCCTTGA---CTTG-ATAGTGTCGGAGCTCTCAACCTCCAACATAATGGTCTTACCGGTA 33611284 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||||||||||||| Sbjct 33611285 AGGGTTTTCACAAAAATTTGCAT 33611307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451975932906960