Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 127 3e-24 seq1 93.3 5e-14 >seq3 Length=50312079 Score = 127 bits (140), Expect = 3e-24 Identities = 161/221 (73%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || |||||||| || | || || || ||||||||||| || || ||||| || ||| Sbjct 34659045 TGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGAAAGTCAATCCGGGCATAAGCCCC 34658986 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 | |||||||| ||| |||||||| || || || ||||| || ||||| |||||||| Sbjct 34658985 CTCTTCTTCAGCCAAAAAATCGCGCAGAAGCTCCCCGAGAAAAAAATCCCTTCCACACAA 34658926 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 127711 || ||||||| | | ||| ||||| || | | ||||| |||| |||||||| Sbjct 34658925 GCAAACGCAATAATCCTCTCCGCAAACGA---CTCCCCTCCATCAATCCACCTCATCGCC 34658869 Query 127712 CACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 |||| ||||| ||||||| ||| || | |||| ||||| Sbjct 34658868 CACTTGGCCTTCTTCTCGACACACGGAATCGTCTCAATCGC 34658828 >seq1 Length=51465339 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||| || || || || || ||||||||| || || || ||||| || || | |||| Sbjct 39365715 CCCTCATCTCGCGAAATCAGCTCATTCGAGTAGGTCAATCCAGGCATCAGCCCTCTCTTC 39365774 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 |||||||| || | ||| ||||| || ||||| || ||||| |||||||| || ||| Sbjct 39365775 TTCAACCAAAACACCGCGCAAAAACTCCCCGAGAAAAAAATCCCTTCCACACAAGCAAAC 39365834 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | | | ||| || | | | | | ||||| |||| ||| |||||| | Sbjct 39365835 GCCACAATCCTCTCCGC---GAAACACTCCCCTCCATCAATCCACCTCAGCGCCCAATTC 39365891 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||||| |||||| ||| || | |||| ||||| Sbjct 39365892 GCCTTCCTCTCGACACACGGAATCGTCTCAATCGC 39365926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613470190178160