Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq7 132 5e-26 seq1 122 1e-22 seq2 120 3e-22 seq6 100 3e-16 seq3 96.9 4e-15 >seq7 Length=36358036 Score = 132 bits (146), Expect = 5e-26 Identities = 147/196 (75%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| ||| || | |||| |||||||||||||||||||| Sbjct 14364740 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTGCCGGCGAA 14364681 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | ||| | || || ||||| ||||| |||| | Sbjct 14364680 GATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCTTTGTCTTGAATCTTGGCTTTGACATT 14364621 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| |||||||| |||| ||||| |||||||| || || ||||| || Sbjct 14364620 GTCGATTGTGTCGGAGGATTCCACCTCCAGGGTGATAGTTTTGCCGGTGAGGGTTTTCAC 14364561 Query 46582 AAAGATTTGCATTTTG 46597 ||||| ||||| ||| Sbjct 14364560 GAAGATCTGCATCTTG 14364545 >seq1 Length=51465339 Score = 122 bits (134), Expect = 1e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||||| ||| || | |||| |||||||| || |||||||| Sbjct 30446263 TCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGTTTTCCGGCGAAG 30446322 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||| |||||||||| || | || || ||||| ||| || |||| | Sbjct 30446323 ATGAGGCGTTGCTGGTCGGGAGGGATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTG 30446382 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| |||||||| |||| |||||||||||||| || || ||||| || Sbjct 30446383 TCGATGGTGTCGGAGGATTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTTACG 30446442 Query 46583 AAGATTTGCATTTTG 46597 ||||| |||||| || Sbjct 30446443 AAGATCTGCATTGTG 30446457 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||||| || || | |||| || || |||||||| ||||| Sbjct 45560524 CTCCTTCTGGATATTGTAGTCGGCAAGGGTCCTGCCGTCTTCAAGTTGCTTGCCAGCGAA 45560465 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | || ||||| ||| ||| || ||||| ||| Sbjct 45560464 GATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTGA-CGT 45560406 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||| || || | |||||||| || || || || ||||| | Sbjct 45560405 TGTCGATTGTGTCGGAGCTTTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTTTTCA 45560346 Query 46581 CAAAGATTTGCAT 46593 ||||||||||||| Sbjct 45560345 CAAAGATTTGCAT 45560333 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | ||| |||||| ||||||||||| || | || || | | Sbjct 45561688 ACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCTGCAAGGGTCCTTCC 45561629 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| || || || ||||| | |||||| || | || | | ||||| Sbjct 45561628 ATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCCTT 45561569 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 ||| ||||| ||| | | | | ||||| |||| ||||| |||| || Sbjct 45561568 ATCCTGAATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTC---TCCACTTCCAAGGT 45561512 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || ||||| || ||||||||||| ||||| Sbjct 45561511 GATAGTCTTTCCAGTCAGAGTCTTAACAAAGATCTGCAT 45561473 >seq2 Length=43913520 Score = 120 bits (132), Expect = 3e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| ||| || | |||| || |||||||| |||||||| Sbjct 31249768 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCCAGCTGCTTTCCGGCGAA 31249709 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || || |||||| |||||| ||||| | Sbjct 31249708 GATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATT 31249649 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || || | |||||||| ||||| || || ||||| || Sbjct 31249648 GTCGATGGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTTCAC 31249589 Query 46582 AAAGATTTGCATTTTG 46597 ||||| ||||||||| Sbjct 31249588 GAAGATCTGCATTTTG 31249573 Score = 107 bits (118), Expect = 2e-18 Identities = 157/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||| ||||| |||||||| | ||||| | | || ||| Sbjct 39747330 ACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCTTCG 39747271 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| || | || ||||| || | || | || ||||||||| | Sbjct 39747270 AGCTGCTTACCAGCGAAAATAAGACGTTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGG 39747211 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||| ||| | | | ||||| |||||| |||| |||||||| || Sbjct 39747210 ATCTTGGCTTTGA-CGTTGTCGATTGTGTCAGAACTTTCCACCTCCAAGGTGATGGTCTT 39747152 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCACA 46601 || ||||| ||||| |||||||| |||| | |||||| Sbjct 39747151 TCCGGTCAGAGTTTTCACAAAGATCTGCA-TCTGCACA 39747115 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || |||||||| || | ||||| | |||| ||||||||||| || || || Sbjct 39747540 TCCTTCTGAATATTGTAATCAGCCAGAGTCCTTCCGTCCTCGAGCTGCTTTCCAGCAAAG 39747481 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | || |||||| ||| ||||| ||||| | Sbjct 39747480 ATCAATCTCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTG 39747421 Query 46523 GCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | ||||| |||| || || |||| ||||| || || || |||| ||| ||| Sbjct 39747420 TCAATTGTGTCTGAGCTC---TCGACTTCCAGAGTGATCGTCTTTCCGGTCAACGTCTTA 39747364 Query 46580 ACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 39747363 ACGAAGATCTGCAT 39747350 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| || || | ||| |||||| |||||||||||||| | || || | | Sbjct 39748477 ACGCAACACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCAAGGGTCCTGCC 39748418 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | |||||| || || || ||||| ||||||||||| | || | || ||||| Sbjct 39748417 ATCCTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCTT 39748358 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 ||| ||| || | ||| ||| | | | ||||| |||| || || || | | Sbjct 39748357 ATCC-TGAATTTTTGCTTTGACGTTGTCAATAGTGTCAGAGCTC---TCAACTTCAAGGG 39748302 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| || || || ||||| || || |||||||| |||||| Sbjct 39748301 TGATTGTCTTCCCAGTCAGGGTCTTGACAAAGATCTGCATT 39748261 >seq6 Length=36610139 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || ||| | ||||| ||| | || ||||| |||||||||||||| | Sbjct 34079352 CCACCACGTAGACGGAGCACCAAATGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGCA 34079293 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || ||||||||||| || || || | | ||||||||| | || Sbjct 34079292 AGGGTGCGACCGTCTTCCAGCTGCTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGGGGG 34079233 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | || |||||||||| |||||| |||| | | | ||||| ||| ||| Sbjct 34079232 ATGCCCTCCTTGTCCTGGATCTTAGCTTTGACATTATCAATAGTGTCAGAGCT---TTCA 34079176 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | ||||| || ||||| || || || |||||||| || ||||| Sbjct 34079175 ACTTCTAGGGTGATTGTCTTGCCAGTAAGTGTCTTAACAAATATCTGCAT 34079126 Score = 100 bits (110), Expect = 3e-16 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | || ||| | ||||| ||| | || ||||| ||||| |||||||| | Sbjct 34641802 TGCCACCACGTAGACGGAGCACCAAATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAG 34641743 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||| || || || | | ||||||||| | | Sbjct 34641742 CAAGGGTGCGACCGTCTTCCAGCTGCTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGGG 34641683 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | || |||||||||| |||||| || | | | | ||||| ||| || Sbjct 34641682 GGATGCCCTCCTTGTCCTGGATCTTAGCTTTAACATTATCAATAGTGTCAGAGCT---TT 34641626 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || | |||||||| || || || || || ||||||||||| ||||| Sbjct 34641625 CAACTTCTAGGGTGATGGTCTTTCCAGTAAGTGTCTTAACAAAGATCTGCAT 34641574 Score = 91.5 bits (100), Expect = 2e-13 Identities = 153/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | ||| ||| ||||| ||||||||||| | || ||||| | Sbjct 34642245 ACGGAGCACAAGATGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGCAAGTGTGCGGCC 34642186 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || || || || || || ||||| | | ||||||||| | || | || |||||| Sbjct 34642185 ATCTTCAAGTTGTTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTT 34642126 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 ||| ||||| |||| | | | ||||| |||| ||||| || | ||| Sbjct 34642125 GTCTTGAATCTTTGCTTTGACATTATCAATAGTGTCAGAGCTC---TCCACCTCTAGCGT 34642069 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||||| || || |||| || || |||||||| |||||| Sbjct 34642068 GATGGTCTTTCCTGTCAAAGTCTTCACAAAGATCTGCATT 34642029 Score = 82.4 bits (90), Expect = 9e-11 Identities = 151/220 (69%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | ||| ||| ||||| ||||||||||| | || ||||| | Sbjct 34079797 ACGGAGCACAAGATGGAGGGTAGACTCTTTTTGAATATTGTAGTCTGCAAGTGTGCGGCC 34079738 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || || || || || || ||||| | | ||||||||| | || | || ||| || Sbjct 34079737 ATCTTCAAGTTGTTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTT 34079678 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 ||| ||||| |||| | | | ||||| |||| ||||| || | ||| Sbjct 34079677 GTCTTGAATCTTTGCTTTGACATTATCAATAGTGTCGGAGCTC---TCCACCTCTAGCGT 34079621 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||||| || || |||| || || ||||| || |||||| Sbjct 34079620 GATGGTCTTTCCTGTCAAAGTCTTCACAAAAATCTGCATT 34079581 Score = 82.4 bits (90), Expect = 9e-11 Identities = 158/232 (68%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | || ||| | |||||||| | || ||||| || |||||||| || | Sbjct 34406988 TGCCACCACGTAGACGAAGAACCAGATGAAGGGTGGATTCCTTCTGAATATTGTAATCAG 34406929 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || || | || || ||||| ||||| ||||| || | | |||||| || | | Sbjct 34406928 CTAATGTACGACCATCCTCAAGCTGTTTGCCCGCGAAGATAAGCCTCTGCTGATCAGGAG 34406869 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | || ||||||||| ||||| ||| | | | | ||||| ||| || Sbjct 34406868 GAATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCT---TT 34406812 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || | || ||||| ||||| || || |||||||||||||| ||||| Sbjct 34406811 CAACTTCTAAGGTAATGGTCTTGCCAGTGAGTGTTTTAACAAAGATCTGCAT 34406760 >seq3 Length=50312079 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | ||||||||| | ||| ||||||||| ||||||||||||| Sbjct 6144178 CCTCCACGCAGACGAAGCACCAGATGAAGGGTAGACTCCTTTTGAATATTGTAGTCGGCC 6144119 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||| || || ||||| | | ||||||||| | || Sbjct 6144118 AGTGTGCGGCCATCCTCCAGCTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGG 6144059 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | || ||||||||| ||||| || | | | | ||||| |||| || Sbjct 6144058 ATGCCTTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATGGTGTCTGAGCTC---TCA 6144002 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | ||||| || || || ||||| || || ||||| || ||||| Sbjct 6144001 ACCTCAAGTGTGATAGTCTTCCCAGTCAGAGTCTTCACAAATATCTGCAT 6143952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565204301993520