Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 1e-12 seq6 87.8 1e-12 >seq7 Length=36358036 Score = 87.8 bits (96), Expect = 1e-12 Identities = 165/235 (70%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGT-GCTTTCTTTTTGTATATTATAA 39546 |||| || |||| | ||| || |||||||| | || | || ||| || ||||||||| Sbjct 16384072 CATC-CCTCCTCTGAGACGGAGGACCAAATGAAGGGTTGATTCCTTCCTG-ATATTATAA 16384129 Query 39547 TCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATC- 39605 || |||| || | ||| || | ||||||||| |||| || || | |||||||| Sbjct 16384130 TCATCCAACGTGCAATTATCTTCTAGTTGTTTCCCAGCAAAGATCAACCTTTGCTGATCT 16384189 Query 39606 CGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTA-ATCGTCGCTACTGTGTCTGCGC 39664 |||||| | ||| ||| | || || | || | || || || | ||||| | || Sbjct 16384190 CGAGGGATCCCCTCCTTGTACTCAATCTTAGTCTTGACATTGT--CTGCAGTGTCGGAGC 16384247 Query 39665 TTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || |||| |||||| || || ||||| | |||||| ||||| || ||||| Sbjct 16384248 TTTTGACCTCCAGAGTAATAGTCTTGCCCGTAAGAGTTTTCACGAAAATTTGCAT 16384302 >seq6 Length=36610139 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566 |||||||||||| | ||| ||| || || ||||| ||||| ||||| | | |||| Sbjct 34407428 CAGTACCAAATGGAGTGTGGATTCCTTCTGAATATTGTAATCAGCCAATGTCCTTCCATC 34407369 Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 ||||| || || || ||||||| || | |||||| |||| ||| | ||||| ||||| Sbjct 34407368 CTCCAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGGATTCCTTCCTTGTC 34407309 Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 |||||| || | | | | ||| || | ||||| || || | || ||||| Sbjct 34407308 TTGGATTTTTGCCTTCACATTGTCAATTGTATCCGAACTTTCTACTTCAAGGGTGATTGT 34407249 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || | || || || ||||| ||||| Sbjct 34407248 CTTCCCTGTGAGGGTCTTGACAAAGATTTGCAT 34407216 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || |||||||| | ||| ||| || || |||||||| || || Sbjct 34406759 GCCACCGCGGAGACGAAGAACCAAATGAAGGGTGGATTCCTTCTGAATATTATAGTCAGC 34406700 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| | | |||| || | ||||| || |||| || | | ||||||||| | || Sbjct 34406699 TAAAGTCCTTCCATCCTCGAGCTGTTTGCCCGCAAAGATAAGCCTCTGCTGATCGGGAGG 34406640 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCC 39669 | |||||| ||||| || || || | | |||| | |||||| | |||||| Sbjct 34406639 GATGCCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCGAT--TGTGTCAGAGCTTTCA 34406582 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || || || || || || | |||||| || ||||||||||| Sbjct 34406581 ACCTCAAGGGTTATGGTCTTTCCGGTAAGAGTTTTCACAAAGATCTGCAT 34406532 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||| | ||| || ||||| || | || |||||| || ||||| || | Sbjct 34407674 CATC-CCACCTCTAAGACGGAGCACCAAGTGGAGGGTAGATTCTTTCTGAATATTGTAGT 34407616 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | || |||| || | || || || ||||||| | | |||||| || | Sbjct 34407615 CAGCAAGGGTACGACCATCCTCAAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTG 34407556 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 || | ||||||||| || |||||| || | | | | |||||||| ||| | Sbjct 34407555 GTGGGATGCCTTCTTTATCCTGAATTTTTGCCTTCACATTATCAATTGTGTCTGAGCTCT 34407496 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| |||||||||||||| || || || || || || || || |||||||| Sbjct 34407495 CCACCTCCAAAGTAATTGTCTTTCCTGTCAATGTCTTCACAAAAATCTGCAT 34407444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347349168805658