Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 134 2e-26 seq5 102 1e-16 seq4 102 1e-16 >seq3 Length=50312079 Score = 134 bits (148), Expect = 2e-26 Identities = 238/337 (71%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 || || || ||| | ||||| ||||| || || |||| || ||| |||||| || ||| Sbjct 10900693 TCTAGAATGTCAGCACGATTTGTTGCTGCAATTACAATAACACCAGTGTTTCCTT--CAA 10900750 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GGC 16034 |||||||||| ||||||| ||||||||| | || ||||| | |||||||||| || | Sbjct 10900751 AACCATCCATTTCTGTCAGAAGCTGGTTCAGTGTCTGTTCTCTTTCATCATTCCCTCCTC 10900810 Query 16035 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 || ||||| | | |||| | || || |||||||| ||||||| || || ||||| Sbjct 10900811 CTA-TACCAGTGCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAATACAATGCAG 10900869 Query 16095 GGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 || |||||| || ||| ||| || || || || || || || |||||||| Sbjct 10900870 GGAGCATTTTCTTTGGCTTTCTTGAAA-AGGTCACGCACTCGAGACGCACCAACACCAAC 10900928 Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 16212 |||||| || ||||| | || | ||| || | || || || ||| | ||||| | Sbjct 10900929 AAACATTTCAACAAACTCTGAACCAGAA-ATCGAGAAAAATGGAACACCTGCCTCACCAG 10900987 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 |||| || ||| ||||| || || || || ||||| Sbjct 10900988 CAATAGCCTTGGCTAGAAGGGTTTTCCCAGTTCCTGG 10901024 >seq5 Length=41956025 Score = 102 bits (112), Expect = 1e-16 Identities = 193/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| || ||||| ||||| |||||||| || ||||| |||||||| | Sbjct 7450843 AAACCCATCCATTTCGGTCAACAGCTGATTAATAGTCTGCTCCCGCTCATCATTTCCA-- 7450900 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | ||| | ||||| ||||||||||||||||| || || ||| Sbjct 7450901 CCTCCCATTCCAGCTCCTCTTTGTCTCCCCACAGCATCAATCTCATCAATAAACACAATG 7450960 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 || || |||||| | || ||||| | ||||| || | | || || |||| Sbjct 7450961 CAAGG--CGCTTTCGCCTTGGCCTTCTCAAACAAATCCCTAACTCTCGACGCACCAACAC 7451018 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 |||| |||| |||||||| | | || | ||| | || || || |||| Sbjct 7451019 CAACGAACAATTCCACAAACTCAGAAGCAGCACACGAAAAAAATGGTGTGCCAGCCTCAC 7451078 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | |||| || | || | ||||||||| ||||| ||||| Sbjct 7451079 CTGCAACCGCCCTAGCCAAAAGAGTCTTCCCCGTCCCTGG 7451118 >seq4 Length=35924511 Score = 102 bits (112), Expect = 1e-16 Identities = 146/200 (73%), Gaps = 12/200 (6%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || || |||||||||||||| |||||||||||||| || || | |||||||| | | Sbjct 26465303 AACCCGTCCATCTCTGTCAACAGCTGGTTAATAGTCTGCTCTCTCTCATCATTTCC--AC 26465360 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | ||| || || | | ||| | ||||| ||||||||||||||||| || || |||| Sbjct 26465361 CTCCCATTCCTGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATGC 26465420 Query 16093 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTT--GGCGCCCACA 16148 | || |||||| | || ||||| | ||||| ||| ||| ||| || ||| Sbjct 26465421 AAGG--AGCTTTCGCCTTTGCCTTCTCAAACAAATCCC--TCACTCTTGAGGCACCAACA 26465476 Query 16149 CCAACAAACATCTCCACAAA 16168 |||||||||| |||||||| Sbjct 26465477 CCAACAAACAATTCCACAAA 26465496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620704953714720