Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 seq5 105 8e-18 seq1 100 3e-16 seq4 98.7 1e-15 >seq3 Length=50312079 Score = 127 bits (140), Expect = 2e-24 Identities = 234/336 (70%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9282 || || || ||| | ||||| || || || || |||| || ||| |||||| || ||| Sbjct 10900693 TCTAGAATGTCAGCACGATTTGTTGCTGCAATTACAATAACACCAGTGTTTCCTT--CAA 10900750 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GGC 9341 |||||||||| ||||||| ||| ||||| | || ||||| | |||||||||| || | Sbjct 10900751 AACCATCCATTTCTGTCAGAAGCTGGTTCAGTGTCTGTTCTCTTTCATCATTCCCTCCTC 10900810 Query 9342 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 || ||||| | | |||| | || || |||||||| ||||||| || ||||| || Sbjct 10900811 CTA-TACCAGTGCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAATACAATGCAG 10900869 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || |||||| ||| | | || || || || || | || || ||||||||| Sbjct 10900870 GGAGCATTTTCTTTGGCTTTCTTGAAAAGGTCACGCACTCGAGACGCACCAACACCAACA 10900929 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 ||||| || ||||| | || | ||| || | || || || ||| | ||||| || Sbjct 10900930 AACATTTCAACAAACTCTGAACCAGAA-ATCGAGAAAAATGGAACACCTGCCTCACCAGC 10900988 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| || ||| ||||| || || || || ||||| Sbjct 10900989 AATAGCCTTGGCTAGAAGGGTTTTCCCAGTTCCTGG 10901024 Score = 118 bits (130), Expect = 1e-21 Identities = 150/206 (73%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || ||||||||||| | ||||| || ||||| ||||| | || ||||| || ||| Sbjct 34659045 TGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGAAAGTCAATCCGGGCATAAGCCCC 34658986 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 | |||||||| |||| |||| |||||||| ||| ||||| || || || |||||||| Sbjct 34658985 CTCTTCTTCAGCCAAAAAATCGCGCAGAAGCTCCCCGAGAAAAAAATCCCTTCCACACAA 34658926 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCC 117465 |||||||||| || | ||| || || || | | |||| ||| |||| ||| Sbjct 34658925 GCAAACGCAATAATCCTCTCCGCAAACGA---CTCCCCTCCATCAATCCACCTCATCGCC 34658869 Query 117466 CATTTCGCCTTCTTCTCAATACATGG 117491 || || ||||||||||| | ||| || Sbjct 34658868 CACTTGGCCTTCTTCTCGACACACGG 34658843 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || ||||| ||||||||||||||||| ||||| || ||| | |||||||| | | Sbjct 36376508 GGGAGGGCAATTGATGCCAAATTGCATACAGCAGTTTCAGATGGACTAGTGTACTCAATA 36376449 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || ||||||| |||||||| || || || |||| |||| ||||| |||||| || Sbjct 36376448 ATCTCAGTACACAGGTTGGAACATTTGATTGTTCCCAGGTTCTGCTGGTTGCTCTTTCTG 36376389 Query 106577 TTGCACGCATCCT 106589 ||||| | ||||| Sbjct 36376388 TTGCAGGTATCCT 36376376 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || || ||||||||||||||||||||||| || ||| | |||||||| | | Sbjct 36405732 GGGAGTGCAATTGATGCCAAATTGCAAACAGCAGTTTCAGATGGACTCGTGTACTCAATA 36405673 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || ||||||| |||||||| || || || |||| |||| ||||| |||||| || Sbjct 36405672 ATCTCAGTACACAGGTTGGAACATTTGATTGTTCCCAGGTTCTGCTGGTTGCTCTTTCTG 36405613 Query 106577 TTGCACGCATCCT 106589 ||||| | ||||| Sbjct 36405612 TTGCAGGTATCCT 36405600 >seq5 Length=41956025 Score = 105 bits (116), Expect = 8e-18 Identities = 246/367 (67%), Gaps = 8/367 (2%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| | ||||| | || | ||| |||||| | |||| | || ||||| || Sbjct 7450756 ATCAAACCTTCCTGGCCTTAGCAATGCGGAATCAAGAACATCAGGTCTGTTTGTCGCAGC 7450815 Query 9254 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313 | |||| || || | | | | ||| |||||||| || ||||| || || ||||| Sbjct 7450816 CAACACAATAACCCCAGAATTACCAGAAAACCCATCCATTTCGGTCAACAGCTGATTAAT 7450875 Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACG 9371 ||| || ||||| |||||||| | | | ||| ||||| | | ||| | ||||| Sbjct 7450876 AGTCTGCTCCCGCTCATCATTTCCA--CCTCCCATTCCAGCTCCTCTTTGTCTCCCCACA 7450933 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGC--GGGCGATTTCAAAGA 9429 ||||||||||||||||| || ||||| || || |||||| ||| | ||||| | Sbjct 7450934 GCATCAATCTCATCAATAAACACAATGCAAGG--CGCTTTCGCCTTGGCCTTCTCAAACA 7450991 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 ||| | ||| || || || |||||||| |||| |||||||| | | || | || Sbjct 7450992 AATCCCTAACTCTCGACGCACCAACACCAACGAACAATTCCACAAACTCAGAAGCAGCAC 7451051 Query 9490 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 | | || || || ||||| |||| || | || | ||||||||| |||| Sbjct 7451052 ACGAAAAAAATGGTGTGCCAGCCTCACCTGCAACCGCCCTAGCCAAAAGAGTCTTCCCCG 7451111 Query 9550 TACCTGG 9556 | ||||| Sbjct 7451112 TCCCTGG 7451118 >seq1 Length=51465339 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 9/203 (4%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||||||||| ||||| || ||||| ||| || | || ||||| || || | |||| Sbjct 39365715 CCCTCATCTCGCGAAATCAGCTCATTCGAGTAGGTCAATCCAGGCATCAGCCCTCTCTTC 39365774 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||||||||| | | ||||| || ||| ||||| || || || |||||||| |||||| Sbjct 39365775 TTCAACCAAAACACCGCGCAAAAACTCCCCGAGAAAAAAATCCCTTCCACACAAGCAAAC 39365834 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACT---TTGTGTCAAACCATTTCATTGCCCAT 117468 || | || | ||| ||||| | ||| | |||| ||| ||| ||||| Sbjct 39365835 GCCACAATCCTCTCCGCGAA------ACACTCCCCTCCATCAATCCACCTCAGCGCCCAA 39365888 Query 117469 TTCGCCTTCTTCTCAATACATGG 117491 ||||||||| |||| | ||| || Sbjct 39365889 TTCGCCTTCCTCTCGACACACGG 39365911 >seq4 Length=35924511 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || || |||||||||||||| || ||||||||||| || || | |||||||| | | Sbjct 26465303 AACCCGTCCATCTCTGTCAACAGCTGGTTAATAGTCTGCTCTCTCTCATCATTTCC--AC 26465360 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | ||| || || | | ||| | ||||| ||||||||||||||||| || ||||| | Sbjct 26465361 CTCCCATTCCTGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATGC 26465420 Query 9400 ATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 | || |||||| || | ||||| | ||| | || ||| ||| || ||||| Sbjct 26465421 AAGG--AGCTTTCGCCTTTGCCTTCTCAAACAAATCCCTCACTCTTGAGGCACCAACACC 26465478 Query 9458 AACAAACATCTCCACAAA 9475 |||||||| |||||||| Sbjct 26465479 AACAAACAATTCCACAAA 26465496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589945209408240