Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq4507 138 3e-28 >seq4507 Length=1168 Score = 138 bits (152), Expect = 3e-28 Identities = 434/652 (67%), Gaps = 34/652 (5%) Strand=Plus/Plus Query 9131 CTTTCTGGCCGAGATGGAGAAGGTCGTCCCTTGGTCGCGGCTGCTGTCGGT--GATCGGG 9188 ||||||||||||||||||| |||| || || ||| || ||||| |||| ||||| | Sbjct 131 CTTTCTGGCCGAGATGGAGCAGGTGGTTCCGTGGCAGCAACTGCT--CGGTCTGATCGCG 188 Query 9189 CCGTATTACCCGAA---GGGCGAGCGTGGCCGGCCGCCGATTGGCCTGGAACGGATGCTG 9245 ||| | || ||| |||| || || |||| |||| | |||| |||| || Sbjct 189 CCGCACTATCCGGTATCGGGCCGGCCAGGTCGGCAGCCGTACGCACTGGCGACGATGTTG 248 Query 9246 CGGATCTACTTGCTGCAGCAGTGGTACGGGTTGTCGGACGAAGGGCTTGAAGATGCGCTC 9305 ||||| | |||||||||||||||| | | || || | | | ||||| || || Sbjct 249 CGGATTCATCTGCTGCAGCAGTGGTATGCGCTGAGCGATCCGGCGATGGAAGAAGCACTG 308 Query 9306 TACGACAGCATCGCGA---TGCG-CGCCTTCGCGGGCATCGACCTGGCGCGCGAGAACGT 9361 |||| | || ||| |||| || || | || ||| |||| | || ||||| Sbjct 309 CACGAGA---TCCCGACCTTGCGGCGGTTTGCCCAGC-TCGG--TGGCTTG-GACAACGT 361 Query 9362 GCCGGACGCCACCACGCTGTTGAAATTCCGGCGCCTGCTGGTCGAGCACGCACTGAC--- 9418 ||||||| |||||| | | || || ||||||||||||| || | || | Sbjct 362 TCCGGACGAGACCACGATTCTCAACTTTCGGCGCCTGCTGGAGACCCATGGCCTTGCCGC 421 Query 9419 GCGAAAGCTGTTCGACGAGATCG-GCATCGAGTTGTGCGAGCGCGGGCT-GATGATGAAG 9476 ||| | |||| | | | || ||||| || ||| || |||| || || | Sbjct 422 GCGGATGCTGGAAGCGGTCAACGCGCATC----TG-GCGCGCAAGGGCCAGAGCCTGCGG 476 Query 9477 GAAGGCACGCTGGTGGATGCGACGATCTTCGAGGCTGCGCCGTCC-ACGAAGAACGCCGG 9535 |||||| | || ||||||||| | ||| ||| || | || | || ||||| |||| Sbjct 477 TCGGGCACGATCGTCGATGCGACGCTGATCGCGGC-GCCCAGTTCGACCAAGAATGCCGA 535 Query 9536 GAAGAGCCGTGACCCGGAGATGCATCAGACGAAGAAGGGCAACGACTGGTATTTCGGCAT 9595 || || ||||| |||||||||||||| ||||||||||| | ||||||||||| || Sbjct 536 CAACGCGCGCGACCCTGAGATGCATCAGACCAAGAAGGGCAATCAGTGGTATTTCGGGAT 595 Query 9596 GAAGGCCCATGTCGGCGTCGACGCCGACTCGGGTCTGGTGCATAGCGTGGTCACCACGGC 9655 |||||| || ||||||| || | || || ||||||| ||| ||| || Sbjct 596 GAAGGCGCACATCGGCGTGGATGAATTTTCCGGGTTGGTGCACCACGTCCATTGCACAGC 655 Query 9656 GGCCAACGAGCCGGACGTATCGCAGGCCCACGCCCTGCTGCACGGTCATGAGCAGGAAGC 9715 ||||||| | || || || | ||| | ||||||| || || || || ||| Sbjct 656 CGCCAACGTCGCCGATGTCACGGTGATGCACACGTTGCTGCATGG-CA-AAGAAGACAGC 713 Query 9716 --GTTTGGCGATGCGGGCTACACCGGCGTGGACAAGCGCGAGGAGATGAAGG 9765 ||| |||||| ||||||||||| | |||||| ||||| || || ||| Sbjct 714 GTGTTCGGCGATAGCGGCTACACCGGTGCGGACAAACGCGAAGAACTGCAGG 765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119026778333176