Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq4825 590 7e-164 seq6 383 2e-101 seq8 329 4e-85 seq36 152 6e-32 seq4 116 4e-21 seq1 107 2e-18 >seq4825 Length=155848 Score = 590 bits (654), Expect = 7e-164 Identities = 732/996 (73%), Gaps = 8/996 (1%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| ||||| | ||| | ||||| |||| ||||| ||||| || Sbjct 1277 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1218 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| |||||| || ||| | | ||| || ||| | || || |||||||| || Sbjct 1217 ATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATTGCTGCTCC 1159 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | |||||||| | || ||||| | ||||| ||||| Sbjct 1158 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGCAACAA 1099 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || || || ||||| || |||| |||| || || ||| | ||||| || ||||| Sbjct 1098 TATTATTTCCGGTGCCATTATTCCGACTTCTGCAGCTATAGGTTTGCACTTTTATCCAAT 1039 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 |||||||| ||| | | ||||| |||||||| || ||||||||||| | || ||| Sbjct 1038 CTGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGTCCTTATGAATT---AAT 982 Query 168790 C-TTC--CACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATA 168846 | ||| ||||| || | || | || ||||||||| | ||||||| | | Sbjct 981 CGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTT 922 Query 168847 CAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATT 168906 | | ||||||||| |||||||||| |||||| |||||||| || || | || || Sbjct 921 CCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 862 Query 168907 TGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGG 168966 ||| || ||| | | |||||| | ||||| || || |||||||||||||||||||| Sbjct 861 TGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGG 802 Query 168967 AATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCA 169026 ||| ||||| || |||||||||||| | |||||||| || ||||||||||| |||||||| Sbjct 801 AATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 742 Query 169027 TCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCA 169086 || || || ||| ||| ||||| ||| | ||||| || || ||||| || ||||| Sbjct 741 CCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCA 682 Query 169087 TGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTA 169146 |||||| | ||||| ||| | | ||||| || || || || | |||||| || | Sbjct 681 TGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 622 Query 169147 TGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTT 169206 ||||||| |||||| |||||||||||||| |||||||| || || || ||||| || || Sbjct 621 AGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTT 562 Query 169207 CGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCT 169266 || ||||||||||||| ||||| |||||||||||||| | | | ||||||||||| Sbjct 561 TGGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCT 502 Query 169267 AGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATT 169326 ||| | | || || ||| || | ||||| || || | |||||| | || ||||| || Sbjct 501 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTT 442 Query 169327 CAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCC 169386 |||| | || || || || || |||||||| || || ||| | | || | ||| Sbjct 441 CAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAA 382 Query 169387 TACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAA 169446 ||| |||| ||| | ||||| | || ||||||||||||||||| ||||| || ||||| Sbjct 381 TACTTGGGCTGATATCATTAACCGCGCTAACCTTGGTATGGAAGTTATGCACGAACGTAA 322 Query 169447 CGCTCACAACTTCCCACTAGACTTAGCATCTGCTGA 169482 ||||| |||||||| ||||||||||| ||| ||| Sbjct 321 TGCTCATAACTTCCCTCTAGACTTAGCTGCTGTTGA 286 >seq6 Length=36610139 Score = 383 bits (424), Expect = 2e-101 Identities = 435/582 (75%), Gaps = 1/582 (0%) Strand=Plus/Plus Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910 ||||||||| |||||||||| |||||| |||||||| || || | || || ||| Sbjct 34152511 CTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 34152570 Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970 || ||| | | |||||| | ||||| || || ||||||||||||||||||||||| Sbjct 34152571 GTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATC 34152630 Query 168971 TCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCC 169030 ||||| || |||||||||||| | |||||||| || ||||||||||| |||||||| || Sbjct 34152631 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 34152690 Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGT 169090 || || ||| ||| ||||| ||| | ||||| || || ||||| || ||||||||| Sbjct 34152691 TTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGT 34152750 Query 169091 TCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGT 169150 || | ||||| ||| | | ||||| || || || || | |||||| || | ||| Sbjct 34152751 TCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 34152810 Query 169151 TACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGT 169210 |||| |||||| |||||||||||||| |||||||| || || || ||||| || || ||| Sbjct 34152811 TACAGGTTCGGGCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGT 34152870 Query 169211 -AGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 ||||||||||||| ||||| |||||||||||||| | | | |||||||||||||| Sbjct 34152871 CCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGC 34152930 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | || || ||| || | ||||| || || | |||||| | || ||||| ||||| Sbjct 34152931 TGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAA 34152990 Query 169330 CTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTAC 169389 | | || || || || || |||||||| || || ||| | | || | ||| ||| Sbjct 34152991 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATAC 34153050 Query 169390 ATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGT 169431 |||| ||| | ||||| | || |||||||||||||| || Sbjct 34153051 TTGGGCTGATATCATTAACCGCGCTAACCTTGGTATGGAGGT 34153092 Score = 82.4 bits (90), Expect = 9e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 169415 AACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGCA 169474 ||||||||||||||||| ||||| || ||||| ||||| |||||||| ||||||||||| Sbjct 7295905 AACCTTGGTATGGAAGTTATGCACGAACGTAATGCTCATAACTTCCCTCTAGACTTAGCT 7295964 Query 169475 TCTGCTGA 169482 ||| ||| Sbjct 7295965 GCTGTTGA 7295972 >seq8 Length=31745509 Score = 329 bits (364), Expect = 4e-85 Identities = 344/452 (76%), Gaps = 0/452 (0%) Strand=Plus/Plus Query 168818 TACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTT 168877 ||||||||| | ||||||| | | | | ||||||||| |||||||||| |||| Sbjct 5168713 TACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTT 5168772 Query 168878 GCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAG 168937 || |||||||| || || | || || ||| || ||| | | |||||| | ||||| Sbjct 5168773 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAA 5168832 Query 168938 GGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTA 168997 || || ||||||||||||||||||||||| ||||| || |||||||||||| | ||| Sbjct 5168833 GGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTA 5168892 Query 168998 TTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATG 169057 ||||| || ||||||||||| |||||||| || || || ||| ||| ||||| ||| | Sbjct 5168893 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTA 5168952 Query 169058 TTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGA 169117 ||||| || || ||||| || ||||||||||| | ||||| ||| | | ||||| Sbjct 5168953 TTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGG 5169012 Query 169118 GAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACC 169177 || || || || | |||||| || | ||||||| |||||| |||||||||||||| Sbjct 5169013 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACT 5169072 Query 169178 TATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTC 169237 |||||||| || || || ||||| || || || ||||||||||||| ||||| |||||| Sbjct 5169073 TATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 5169132 Query 169238 AACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 |||||||| | | | |||||||||||||| Sbjct 5169133 AACAACTCTCGTTCTTTACACTTCTTCCTAGC 5169164 >seq36 Length=917149 Score = 152 bits (168), Expect = 6e-32 Identities = 208/288 (72%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | | | |||| ||||| | ||| | ||||| |||| ||||| ||||| || Sbjct 329997 TTCTGTAACTAGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 329938 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| |||||| || ||| | | ||| || ||| | || || ||||| || Sbjct 329937 ATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATTGCCATTCC 329879 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | |||||||| |||| ||||| | ||||| ||||| Sbjct 329878 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCAGGATCTCTACTTTATGGCAACAA 329819 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || || || ||||| || |||| |||| || || ||| | ||||| || ||||| Sbjct 329818 TATTATTTCCGGTGCCATTATTCCGACTTCTGCAGCTATAGGTTTGCACTTTTATCCAAT 329759 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTA 168777 |||||||| ||| | | ||||| |||||||| || ||||||||||| Sbjct 329758 CTGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGTCCTTA 329711 >seq4 Length=35924511 Score = 116 bits (128), Expect = 4e-21 Identities = 182/258 (71%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 169226 TATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTA 169285 ||||| |||||||||||||| | | | |||||||||||||| | | || || || Sbjct 4757219 TATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAATA 4757278 Query 169286 TGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAAC 169345 || | ||||| || || | |||||| | || ||| | |||||| | || | || || Sbjct 4757279 AGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGACTTTCAACCTAAATGATTTCAAT 4757338 Query 169346 TTTAACCAATCAGTTGTAGAT-GTTAACGGTAAGATCATTCCTACATGGGGTGACGTACT 169404 || |||||||| || || ||| || || | | | ||| ||| || | ||| | | Sbjct 4757339 TTCAACCAATCTGTAGTTGATAGTCAAGCCTGTG-TAATTAATACTTGAGCTGATATCAT 4757397 Query 169405 TAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACT 169464 |||| | || || ||||||| ||||| |||| || | ||| ||||| |||||| | || Sbjct 4757398 TAACCGCGCTAATCTTGGTAAAGAAGTTATGCTCGAACATAATGCTCATAACTTCTCTCT 4757457 Query 169465 AGACTTAGCATCTGCTGA 169482 ||||||||| ||| ||| Sbjct 4757458 AGACTTAGCTGCTGTTGA 4757475 >seq1 Length=51465339 Score = 107 bits (118), Expect = 2e-18 Identities = 227/338 (67%), Gaps = 37/338 (11%) Strand=Plus/Plus Query 169148 GGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTC 169207 ||||||| |||||| |||||||||||| | | |||||| || | | ||||| || | Sbjct 27733156 GGTTACAGGTTCGGGCAAGAAGAAGAAGCTTGTAATATCGTACCCACTCATGGTTATATT 27733215 Query 169208 GGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTT--CACTTCTTCC 169265 ||| ||||||| ||||| | ||| |||||||||||||| | |||| |||||||||| Sbjct 27733216 GGTCGATTAATATTCCAATCTGCTAGTTTCAACAACTC--TCATTCTTTACACTTCTTCC 27733273 Query 169266 TAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCAT 169325 | |||||||| || | ||| || |||||| | || ||||| | Sbjct 27733274 T------------AGTTGTATCTG---GTTTACTAGCTTAAGGTATCAGCACTATGGCTT 27733318 Query 169326 TCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGAT-GTTAACGGTAAGATCATT 169384 |||| | || || || | || |||||||| || || ||| || || | | | ||| Sbjct 27733319 TCAATCTAAATGGTTTCAGTTTCAACCAATCTGTAGTTGATAGTCAAGACTGTG-TAATT 27733377 Query 169385 CCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGT 169444 ||| |||| ||| | |||| | || || |||| ||||| || Sbjct 27733378 AATACTTGGGCTGATATCGATAACCGTGCTAAGCTTG--------GTAAT--------GT 27733421 Query 169445 AACGCTCACAACTTCCCACTAGACTTAGCATCTGCTGA 169482 || ||||| |||||||| ||||||||||| ||| ||| Sbjct 27733422 AATGCTCATAACTTCCCTCTAGACTTAGCTGCTGTTGA 27733459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564407550060480