Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq4825 527 9e-145 seq6 369 5e-97 seq8 313 4e-80 seq4 122 1e-22 seq36 104 3e-17 >seq4825 Length=155848 Score = 527 bits (584), Expect = 9e-145 Identities = 700/972 (72%), Gaps = 0/972 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| |||| ||||||||||| | ||||| ||| | | | Sbjct 1256 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACC 1197 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| ||||| ||||| || ||||| || || || Sbjct 1196 GCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATT 1137 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| |||| ||| || | ||||| ||||| || || || ||||| || | Sbjct 1136 CGTGAACCTGTTTCTGGATCTCTACTTTATGGCAACAATATTATTTCCGGTGCCATTATT 1077 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 || | ||| || || || || ||||| || || ||||||||||| || | ||||| Sbjct 1076 CCGACTTCTGCAGCTATAGGTTTGCACTTTTATCCAATCTGGGAAGCGGCTTCTGTTGAT 1017 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | ||||| ||||| |||| || | | | | ||||| | ||||| | Sbjct 1016 GAATGGTTATACAACGGTGGTCCTTATGAATTAATCGTTCTACACTTTTTACTTGGTGTA 957 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | ||||||| ||| || | | |||||||| |||||||||| Sbjct 956 GCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATT 897 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | ||||| ||| || ||| | | || ||| || Sbjct 896 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATC 837 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || || ||||||| |||||| || ||||||||||| || ||||||| |||| Sbjct 836 GGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATG 777 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||||||||||||||| || ||||||||||| ||||||||||| || ||| Sbjct 776 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCT 717 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| ||||| | || ||| ||||| ||||| | || || ||| | | Sbjct 716 GGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTG 657 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || || || | |||||| || | ||||||| |||||| ||||| || Sbjct 656 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAA 597 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || |||||||| || || ||||| ||||| || | ||||||||||| || Sbjct 596 GAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 537 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 |||||||||||| | | | ||||||||||| || || | ||||| | ||||| Sbjct 536 AGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATC 477 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| ||||| | ||| || |||||||| |||||||| || |||||||| |||||| Sbjct 476 TGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 417 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || ||||| || || || || ||| ||||||||| || | ||||| | Sbjct 416 CAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGC 357 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || |||||||||||||| |||||||| ||||| ||||| |||||||| ||||||| Sbjct 356 GCTAACCTTGGTATGGAAGTTATGCACGAACGTAATGCTCATAACTTCCCTCTAGACTTA 297 Query 216275 GCTGCTGCTGAA 216286 ||||||| |||| Sbjct 296 GCTGCTGTTGAA 285 >seq6 Length=36610139 Score = 369 bits (408), Expect = 5e-97 Identities = 448/609 (74%), Gaps = 1/609 (0%) Strand=Plus/Plus Query 215627 GGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTAC 215686 || ||| || |||| ||| || | | |||||||| |||||||||| |||||| || Sbjct 34152484 GGGAGAGAGAGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATAT 34152543 Query 215687 TCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCT 215746 || || ||||| | ||||| ||| || ||| | | || ||| ||||||| || Sbjct 34152544 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGC 34152603 Query 215747 TTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAG 215806 || ||||||| |||||| || ||||||||||| || ||||||| |||| |||| |||||| Sbjct 34152604 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAG 34152663 Query 215807 GCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGT 215866 |||||||||||||| || ||||||||||| ||||||||||| || |||||||| ||||| Sbjct 34152664 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 34152723 Query 215867 GGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACA 215926 ||||| | || ||| ||||| ||||| | || || ||| | | ||||| || || Sbjct 34152724 GGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACC 34152783 Query 215927 ACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAAC 215986 || || | |||||| || | ||||||| |||||| ||||| || ||||| || || Sbjct 34152784 ACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAAT 34152843 Query 215987 ATCGTAGCTGCACACGGTTACTTTGGT-CGCCTCATCTTCCAATACGCATCTTTCAACAA 216045 |||||||| || || ||||| |||||| || | ||||||||||| || ||||||||| Sbjct 34152844 ATCGTAGCCGCTCATGGTTATTTTGGTCCGATTAATCTTCCAATATGCTAGTTTCAACAA 34152903 Query 216046 CTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGC 216105 ||| | | | ||||||||||| || || | ||||| | |||||||| ||||| Sbjct 34152904 CTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGC 34152963 Query 216106 AATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGT 216165 | ||| || |||||||| |||||||| || |||||||| |||||||| ||||| || Sbjct 34152964 TTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGT 34153023 Query 216166 AGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGG 216225 || || || ||| ||||||||| || | ||||| | || ||||| Sbjct 34153024 TGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGCGCTAACCTTGG 34153083 Query 216226 TATGGAAGT 216234 |||||| || Sbjct 34153084 TATGGAGGT 34153092 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 216221 CTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCT 216280 |||||||||||||| |||||||| ||||| ||||| |||||||| ||||||| |||||| Sbjct 7295908 CTTGGTATGGAAGTTATGCACGAACGTAATGCTCATAACTTCCCTCTAGACTTAGCTGCT 7295967 Query 216281 GCTGAA 216286 | |||| Sbjct 7295968 GTTGAA 7295973 >seq8 Length=31745509 Score = 313 bits (346), Expect = 4e-80 Identities = 340/451 (75%), Gaps = 0/451 (0%) Strand=Plus/Plus Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693 ||||||| ||| || | | |||||||| |||||||||| |||||| || || || | Sbjct 5168726 AGTGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTC 5168785 Query 215694 CTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTG 215753 |||| | ||||| ||| || ||| | | || ||| ||||||| || || |||| Sbjct 5168786 CTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTG 5168845 Query 215754 ATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGC 215813 ||| |||||| || ||||||||||| || ||||||| |||| |||| ||||||||||||| Sbjct 5168846 ATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 5168905 Query 215814 ACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCAT 215873 ||||||| || ||||||||||| ||||||||||| || |||||||| ||||| ||||| Sbjct 5168906 ACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCC 5168965 Query 215874 TGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGC 215933 | || ||| ||||| ||||| | || || ||| | | ||||| || || || || Sbjct 5168966 TATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAA 5169025 Query 215934 AAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAG 215993 | |||||| || | ||||||| |||||| ||||| || ||||| || || ||||||| Sbjct 5169026 ATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAATATCGTAG 5169085 Query 215994 CTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAA 216053 | || || ||||| ||||| || | ||||||||||| || |||||||||||| | Sbjct 5169086 CCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTT 5169145 Query 216054 GTCTTCACTTCTTCCTTGCAGCATTCCCTGT 216084 | | ||||||||||| || || | ||||| Sbjct 5169146 CTTTACACTTCTTCCTAGCTGCTTGGCCTGT 5169176 >seq4 Length=35924511 Score = 122 bits (134), Expect = 1e-22 Identities = 180/256 (70%), Gaps = 12/256 (5%) Strand=Plus/Plus Query 216037 TTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTG 216096 |||||||||||| | | | ||||||||||| || || | ||||| || ||||||| Sbjct 4757227 TTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAATAAGTATCTG 4757286 Query 216097 GGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCA 216156 | ||||| | ||| || |||||| | |||||||| || | |||||| |||||||| Sbjct 4757287 GTTTACTGCTTTAGGTATCAGCACTATGACTTTCAACCTAAATGATTTCAATTTCAACCA 4757346 Query 216157 GTCTGTCGTAGACGCATCTGGTAAA------GTTATTCCTACTTGGGCAGACGTTCTTAA 216210 ||||| || || | || || || ||| |||||| || || | |||| Sbjct 4757347 ATCTGTAGTTGA------TAGTCAAGCCTGTGTAATTAATACTTGAGCTGATATCATTAA 4757400 Query 216211 CAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGA 216270 | | || ||||||| ||||| |||| ||| | ||| ||||| |||||| | |||| Sbjct 4757401 CCGCGCTAATCTTGGTAAAGAAGTTATGCTCGAACATAATGCTCATAACTTCTCTCTAGA 4757460 Query 216271 CTTGGCTGCTGCTGAA 216286 ||| ||||||| |||| Sbjct 4757461 CTTAGCTGCTGTTGAA 4757476 >seq36 Length=917149 Score = 104 bits (114), Expect = 3e-17 Identities = 182/265 (69%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| |||| ||||||||||| | ||||| ||| | | | Sbjct 329976 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACC 329917 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| || ||||| || ||||| || || || Sbjct 329916 GCAACTTCTGTATTTATTATCGCCTTCATTGCCATTCCTCCAGTAGATATTGATGGTATT 329857 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| | || ||| || | ||||| ||||| || || || ||||| || | Sbjct 329856 CGTGAACCTGTTTCAGGATCTCTACTTTATGGCAACAATATTATTTCCGGTGCCATTATT 329797 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 || | ||| || || || || ||||| || || ||||||||||| || | ||||| Sbjct 329796 CCGACTTCTGCAGCTATAGGTTTGCACTTTTATCCAATCTGGGAAGCGGCTTCTGTTGAT 329737 Query 215555 GAATGGCTCTACAATGGTGGACCTT 215579 |||||| | ||||| ||||| |||| Sbjct 329736 GAATGGTTATACAACGGTGGTCCTT 329712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745036652952480