Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq4825 547 8e-151 seq6 360 2e-94 seq8 306 4e-78 seq36 141 1e-28 seq4 111 2e-19 >seq4825 Length=155848 Score = 547 bits (606), Expect = 8e-151 Identities = 711/983 (72%), Gaps = 0/983 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || |||| ||||| ||||| ||||||||||| Sbjct 1268 TGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1209 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 | |||| | ||| | | ||||| | || ||||| || ||||| || || || Sbjct 1208 ACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGAT 1149 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | ||||| ||||| || || || Sbjct 1148 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGCAACAATATTATTTCC 1089 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || ||| | ||||| ||||| || |||||||| Sbjct 1088 GGTGCCATTATTCCGACTTCTGCAGCTATAGGTTTGCACTTTTATCCAATCTGGGAAGCG 1029 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 || || | ||||| ||||| || ||||||||||||||| ||||| | | | ||||| Sbjct 1028 GCTTCTGTTGATGAATGGTTATACAACGGTGGTCCTTATGAATTAATCGTTCTACACTTT 969 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || ||||||||| | ||||||| || | |||| |||||||| Sbjct 968 TTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTAGGTATG 909 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 || |||||||| ||| |||||||| ||||| || |||| || ||||| ||||| Sbjct 908 CGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTG 849 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | || || ||||||| ||| || || || || ||||||||||| ||||| ||||| Sbjct 848 ATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 789 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||||||| | |||||||| || ||||||||||| |||||||||||||| || ||| Sbjct 788 TTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATG 729 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || || || ||||| ||||| | ||| Sbjct 728 TTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTA 669 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || ||||| || || || || | || |||| ||| Sbjct 668 ACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTC 609 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || |||||||||||||| || || || || || || ||||| || ||||| || | ||| Sbjct 608 GGGCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATC 549 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| || ||||| |||| | | ||||||||||| ||| | | ||| Sbjct 548 TTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCT 489 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 |||||| | |||||||| ||| | | ||||| |||| ||||| || ||||| ||||| Sbjct 488 GTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGT 429 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || |||||||| || | || ||| | || ||| || ||| ||||| || Sbjct 428 TTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGAT 369 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 | ||||| | || ||||| ||||||||||| ||||| || |||||||| || |||||| Sbjct 368 ATCATTAACCGCGCTAACCTTGGTATGGAAGTTATGCACGAACGTAATGCTCATAACTTC 309 Query 170659 CCACTTGACTTGGCAACTGCTGA 170681 || || ||||| || ||| ||| Sbjct 308 CCTCTAGACTTAGCTGCTGTTGA 286 >seq6 Length=36610139 Score = 360 bits (398), Expect = 2e-94 Identities = 446/609 (73%), Gaps = 1/609 (0%) Strand=Plus/Plus Query 170023 GGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATAT 170082 || ||| || |||| || | |||| |||||||||| |||||||| ||| |||||| Sbjct 34152484 GGGAGAGAGAGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATAT 34152543 Query 170083 TCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCT 170142 || ||||| || |||| || ||||| ||||| | || || ||||||| ||| Sbjct 34152544 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGC 34152603 Query 170143 TTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAA 170202 || || || || ||||||||||| ||||| ||||| || ||||||||| | |||||||| Sbjct 34152604 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAG 34152663 Query 170203 GCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGA 170262 || ||||||||||| |||||||||||||| || ||| ||| || |||||| | ||||| Sbjct 34152664 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 34152723 Query 170263 GGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACA 170322 || | || || || ||||| ||||| | ||||| ||| | | ||||| || || Sbjct 34152724 GGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACC 34152783 Query 170323 ACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAAC 170382 ||||| || || || || | || |||| ||||| |||||||||||||| || || Sbjct 34152784 ACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAAT 34152843 Query 170383 ATTGTTGCAGCACATGGATACTTTGGT-AGACTTATCTTCCAATATGCTAGCTTTAACAA 170441 || || || || ||||| || |||||| || | ||||||||||||||||| || ||||| Sbjct 34152844 ATCGTAGCCGCTCATGGTTATTTTGGTCCGATTAATCTTCCAATATGCTAGTTTCAACAA 34152903 Query 170442 TAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTC 170501 |||| | | ||||||||||| ||| | | ||||||||| | |||||||| ||| | Sbjct 34152904 CTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGC 34152963 Query 170502 AATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGT 170561 | ||||| |||| ||||| || ||||| ||||| || || |||||||| || | || Sbjct 34152964 TTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGT 34153023 Query 170562 AGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGG 170621 ||| | || ||| || ||| ||||| || | ||||| | || ||||| || Sbjct 34153024 TGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGCGCTAACCTTGG 34153083 Query 170622 TATGGAAGT 170630 |||||| || Sbjct 34153084 TATGGAGGT 34153092 >seq8 Length=31745509 Score = 306 bits (338), Expect = 4e-78 Identities = 349/469 (74%), Gaps = 0/469 (0%) Strand=Plus/Plus Query 170017 TACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTA 170076 ||||||||| | ||||||| || | |||| |||||||||| |||||||| ||| Sbjct 5168713 TACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTT 5168772 Query 170077 GCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAG 170136 |||||||| ||||| || |||| || ||||| ||||| | || || ||||||| Sbjct 5168773 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAA 5168832 Query 170137 GGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTA 170196 ||| || || || || ||||||||||| ||||| ||||| || ||||||||| | ||| Sbjct 5168833 GGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTA 5168892 Query 170197 TTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATG 170256 ||||| || ||||||||||| |||||||||||||| || ||| ||| || |||||| | Sbjct 5168893 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTA 5168952 Query 170257 TTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGA 170316 ||||| || | || || || ||||| ||||| | ||||| ||| | | ||||| Sbjct 5168953 TTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGG 5169012 Query 170317 GAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACA 170376 || || ||||| || || || || | || |||| ||||| |||||||||||||| Sbjct 5169013 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACT 5169072 Query 170377 TACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTT 170436 || || || || || || ||||| || ||||| || | ||||||||||||||||| || Sbjct 5169073 TATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 5169132 Query 170437 AACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTAT 170485 ||||| |||| | | ||||||||||| ||| | | ||||||| || Sbjct 5169133 AACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGAAT 5169181 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || |||| ||||| ||||| ||||||||||| Sbjct 2878694 TGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 2878753 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 | |||| | ||| | | ||||| | || ||||| || ||||| || || || Sbjct 2878754 ACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGAT 2878813 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | ||||| ||||| || || || Sbjct 2878814 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGCAACAATATTATTTCC 2878873 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTT 169919 ||||| || |||| |||| || || ||| | ||||| Sbjct 2878874 GGTGCCATTATTCCGACTTCTGCAGCTATAGGTTTGCACTT 2878914 >seq36 Length=917149 Score = 141 bits (156), Expect = 1e-28 Identities = 200/281 (71%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 169703 TAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCATGTC 169762 |||| ||||| | ||||| | || |||| ||||| ||||| ||||||||||| | Sbjct 329984 TAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTT 329925 Query 169763 TATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGACATCG 169822 |||| | ||| | | ||||| | || ||||| || ||| || || || || | Sbjct 329924 TATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCCATTCCTCCAGTAGATATTG 329865 Query 169823 ATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTG 169882 |||| || | |||||||| |||| || | | ||||| ||||| || || || |||| Sbjct 329864 ATGGTATTCGTGAACCTGTTTCAGGATCTCTACTTTATGGCAACAATATTATTTCCGGTG 329805 Query 169883 CAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAA 169942 | || |||| |||| || || ||| | ||||| ||||| || |||||||| || Sbjct 329804 CCATTATTCCGACTTCTGCAGCTATAGGTTTGCACTTTTATCCAATCTGGGAAGCGGCTT 329745 Query 169943 CTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTA 169983 || | ||||| ||||| || ||||||||||||||| ||||| Sbjct 329744 CTGTTGATGAATGGTTATACAACGGTGGTCCTTATGAATTA 329704 >seq4 Length=35924511 Score = 111 bits (122), Expect = 2e-19 Identities = 182/261 (70%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 170424 ATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGT 170483 ||||||||| || ||||| |||| | | ||||||||||| ||| | | |||||| | Sbjct 4757218 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAAT 4757277 Query 170484 ATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAA 170543 | | |||||||| ||| | | ||||| |||| ||| | || ||||| |||| || || Sbjct 4757278 AAGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGACTTTCAACCTAAATGATTTCAA 4757337 Query 170544 CTTCAACCAGTCAATCGTAGATGG---ATCTGGTAAAGTAGTTCCTACATGGGCAGACGT 170600 |||||||| || | || ||| | | | || ||| || ||| || || || | Sbjct 4757338 TTTCAACCAATCTGTAGTTGATAGTCAAGCCTGT---GTAATTAATACTTGAGCTGATAT 4757394 Query 170601 TCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCC 170660 ||||| | || || || |||| ||||| |||| || | |||||| || |||||| | Sbjct 4757395 CATTAACCGCGCTAATCTTGGTAAAGAAGTTATGCTCGAACATAATGCTCATAACTTCTC 4757454 Query 170661 ACTTGACTTGGCAACTGCTGA 170681 || ||||| || ||| ||| Sbjct 4757455 TCTAGACTTAGCTGCTGTTGA 4757475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582812839694400