Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq4825 625 3e-174 seq6 408 5e-109 seq8 352 3e-92 seq4 125 8e-24 >seq4825 Length=155848 Score = 625 bits (692), Expect = 3e-174 Identities = 724/973 (74%), Gaps = 2/973 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||||||||| |||||||||||||| || || |||| Sbjct 307 GGGAAGTTATGAGCATTACGTTCGTGCATAACTTCCATACCAAGGTTAGCGCGGTTAATG 366 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | |||||| ||| ||||| || | | || ||||| || Sbjct 367 ATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACAGATTGGTTGAAATTG 426 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| ||||| | ||| | ||||| |||||| || || || Sbjct 427 AAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAGATACCTACT 486 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| | ||| ||||| | ||||||| |||||||| |||||| ||| Sbjct 487 ACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 546 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || ||||| || || |||||||||||||| |||||||| Sbjct 547 AAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGC 606 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 |||||| ||||||| | || || |||||||||| ||||| | ||| | | ||| Sbjct 607 CCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 666 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| ||||| | || |||||||||||||| || || Sbjct 667 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACGCCT 726 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||||||||| || || |||||||| |||| |||| ||||| Sbjct 727 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 786 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| |||||||| || ||||| |||| || || Sbjct 787 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCGATTGGGTAG 846 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| || Sbjct 847 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGT 906 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||| ||||| ||||||||||||||| | | |||||| Sbjct 907 CGCATACCTAGACGGAAACTAAGCTCCCACTCACGACCCATGTAACAAGCTACACCAAGT 966 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | ||||| | || | | || |||||| ||||| || |||| |||||| || | | Sbjct 967 AAAAAGTGTAGAACGATTAATTCATAAGGACCACCGTTGTATAACCATTCATCAACAGAA 1026 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||||| || ||||| || || | ||| ||||| ||| | |||| | |||| Sbjct 1027 GCCGCTTCCCAGATTGGATAAAAGTGCAAACCTATAGCTGCAGAAGTCGGAATAATGGCA 1086 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 || ||||| || ||||| || || | ||||| |||| || || ||||| ||||| ||| Sbjct 1087 CCGGAAATAATATTGTTGCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCA 1146 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || ||| ||| ||| || || || || ||||| ||| || | | || Sbjct 1147 ATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGA-AGTTGCGGTCAATAA 1205 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 ||| || ||||| | | |||||||| |||| || | |||||| | ||| ||| | Sbjct 1206 AGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTAT 1265 Query 84944 CCAATCACAGAAG 84956 ||| | ||||||| Sbjct 1266 CCAGTTACAGAAG 1278 >seq6 Length=36610139 Score = 408 bits (452), Expect = 5e-109 Identities = 443/586 (76%), Gaps = 1/586 (0%) Strand=Plus/Minus Query 84014 CACTTCCATACCAAGCCCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTT 84073 ||| ||||||||||| || || |||| | ||| ||||| ||||| | |||||| Sbjct 34153093 CACCTCCATACCAAGGTTAGCGCGGTTAATGATATCAGCCCAAGTATTAATTACACGGCC 34153034 Query 84074 TTGGCTATCGACAAGACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCT 84133 ||| ||||| || | | || ||||| || || ||||| || || || ||||| ||||| Sbjct 34153033 TTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCT 34152974 Query 84134 AACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAG 84193 | ||| | ||||| |||||| || || || || ||||||||||| | ||| ||||| | Sbjct 34152973 GATACCTAAAGCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAA 34152914 Query 84194 AGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACG-ACCGAAGTAGCCGTGAG 84252 ||||||| |||||||| |||||| |||||||| | || ||| || || || |||| Sbjct 34152913 AGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGGACCAAAATAACCATGAG 34152854 Query 84253 CAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGA 84312 | || || |||||||||||||| |||||||| |||||| ||||||| | || || Sbjct 34152853 CGGCTACGATATTATAAGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATT 34152794 Query 84313 CATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGA 84372 |||||||||| ||||| | ||| | | ||| || || | ||||||||||| ||| | Sbjct 34152793 CATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAA 34152734 Query 84373 ATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGT 84432 |||| | || |||||||||||||| || || ||||||||||| || ||||||||||||| Sbjct 34152733 ATAGGGAACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGT 34152674 Query 84433 TATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGC 84492 | || || |||||||| |||| |||| ||||||| || || ||||| || || ||||| | Sbjct 34152673 TGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATAC 34152614 Query 84493 CATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAA 84552 ||||||| || ||||| |||| || || | | ||| ||||||| || ||||||| Sbjct 34152613 CATCAGAAAAGCTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAA 34152554 Query 84553 CTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACG 84598 | ||||| || || |||||| ||||| || |||||||| ||||| Sbjct 34152553 CAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCTAGACG 34152508 >seq8 Length=31745509 Score = 352 bits (390), Expect = 3e-92 Identities = 357/465 (77%), Gaps = 0/465 (0%) Strand=Plus/Minus Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| | ||| ||||| | ||||||| |||||||| |||||| ||| Sbjct 5169176 ACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 5169117 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || ||||| || || |||||||||||||| |||||||| Sbjct 5169116 AAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGC 5169057 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 |||||| ||||||| | || || |||||||||| ||||| | ||| | | ||| Sbjct 5169056 CCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 5168997 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| ||||| | || |||||||||||||| || || Sbjct 5168996 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACGCCT 5168937 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||||||||| || || |||||||| |||| |||| ||||| Sbjct 5168936 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 5168877 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| |||||||| || ||||| |||| || || Sbjct 5168876 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCGATTGGGTAG 5168817 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| || Sbjct 5168816 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGT 5168757 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAA 84629 |||||||| ||||| | ||| ||||| ||||||||||||||| Sbjct 5168756 CGCATACCTAGACGGAAACTAAGCTCCCACTCACGACCCATGTAA 5168712 >seq4 Length=35924511 Score = 125 bits (138), Expect = 8e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 83987 GAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGTAC 84046 ||||||||| || ||| ||||| |||| ||||| ||||||| || || |||| | Sbjct 4757452 GAAGTTATGAGCATTATGTTCGAGCATAACTTCTTTACCAAGATTAGCGCGGTTAATGAT 4757393 Query 84047 ATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAA 84106 ||| || || ||||| | |||| | ||| ||||| || | | || ||||| || || Sbjct 4757392 ATCAGCTCAAGTATTAATTACACAGGCTTGACTATCAACTACAGATTGGTTGAAATTGAA 4757333 Query 84107 TCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCAC 84166 |||| || || || | ||| ||||| | ||| | ||||| |||||| || | | || Sbjct 4757332 ATCATTTAGGTTGAAAGTCATAGTGCTGATACCTAAAGCAGTAAACCAGATACTTATTAC 4757273 Query 84167 TGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATA 84220 ||||||||||| | ||| ||||| | ||||||| |||||||| |||||| Sbjct 4757272 AGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATA 4757219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571239137920080