Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 235 6e-57 >seq3 Length=50312079 Score = 235 bits (260), Expect = 6e-57 Identities = 587/882 (67%), Gaps = 27/882 (3%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || ||||| || |||||| || |||||||||||||| || |||| || || || | Sbjct 34659351 TTCTGATACTCCCCAACTCGCTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 34659292 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||||||||||| | |||||||| || || | || || || | Sbjct 34659291 TCCATCCAATCAAATGGATTCTGCACATTATACATCTTCCCATACCCCAACGCTCCCAAC 34659232 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||||| ||||| |||||||| |||||| ||| | |||||| || | || Sbjct 34659231 AACCTATCCGCCACAAACTTAATATACTGACTCATCAAATCCCCATTCATCCCAACCAAA 34659172 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | || | ||||| || ||| || || || | || || || | || ||| Sbjct 34659171 GCACACGGCAAAGCATCACAAACAAACTCCCTCTCAATCTCAACCGCATCCGCTACAATC 34659112 Query 18910 GATACAACTCTATCTTCATTAGG----AGGGTATAGAAGATGTTTAAACATCAAACATGC 18965 ||| | || ||| | || | | | || | | ||| || |||||| Sbjct 34659111 CCCTTAACCCGCTCCTCACTCGGCTTCATCCTCAACAAA----TCATACAACATACATGC 34659056 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 |||||||||||| || ||||| || || |||| ||||| || || || || || || Sbjct 34659055 AAAATCACAATGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGAAAGTCAATCCGGG 34658996 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA-GAAAAGAATATAC 19084 ||| || || || || || | ||| || || | ||| | | ||| || || || || | Sbjct 34658995 CATAAGCCCCCTCTTCTTCAGCCAAAAAATCGC-GCAGAAGCTCCCCGAGAAAAAAATCC 34658937 Query 19085 CTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATA--ACTAGCATCATTATTATGAAT 19142 |||| || ||||| |||| | || || || | ||| | || || ||| Sbjct 34658936 CTTCCACACAAGCAAACGCAATAATCCTCTCCGCAAACGACTCCCCTCC-----ATCAAT 34658882 Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 ||| ||| ||||| | |||||||| | ||||| || || ||||| || | | || Sbjct 34658881 CCACCTCATCGCCCACTTGGCCTTCTTCTCGACACACGGAATCGTCTCAATCGCCCTGAA 34658822 Query 19203 TAGATACATACGC----TCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258 | || | ||| || || | ||| |||| ||| || | ||| ||||| |||| Sbjct 34658821 CA---ACCT-CGCCTTCTCCTCCGAATCCTTAATATAACTCTCCAACAACAAACTATACA 34658766 Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 | || ||||||||||| ||||| || |||||||| || |||||| || || || | | Sbjct 34658765 TCTCCGAATGAATATTCTCTATCGCAATCTGAAACCCATAAAAAGCCCTCGCCTCCGCCA 34658706 Query 19319 TCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCT 19377 ||| || || || || ||| || || ||||||| || || || |||||| ||| Sbjct 34658705 CCTGCACCTC-CTTCATAAACCTCCCGGCCAAATTCTCGAGCACAATGCCATCAGAAGCG 34658647 Query 19378 GCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAA 19437 || ||||| || | ||||| ||||||| || || ||||| || || || | | ||| Sbjct 34658646 GCGAAAAAAGCGAGAACATGGGTAATAAAGTGCTTCTCATCAGAAGTCAAAGCTTCCCAG 34658587 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 | | | |||||| ||||||||| ||||| || | ||||| ||||| ||||| ||||| Sbjct 34658586 TGAACATTATCTTGAGATAAATCGACTTCCTCGGCGGTCCAGAAAGAGGCCTCGGCTTTC 34658527 Query 19498 TTATACATGTTCCATATATCACGATATTGTATAGGAAATATA 19539 || ||||| | ||| || | | | ||||| || || || ||| Sbjct 34658526 TTGTACATCTCCCAGATCTGAGGGTATTGAATTGGGAACATA 34658485 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| |||||||| | ||| | ||||| | || |||| | | |||||| |||||||| Sbjct 36375077 ACCCCCTTGATCAACATAGCGAGCAGTGTCATTGAAAACACGAAGCATTGGAACAATACC 36375018 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| ||||||| ||||| ||||||||| ||| |||| | |||||| || || Sbjct 36375017 ATTGGATGTACCATTTGTTCCACGAATATAACTACCAGTAGCACGGATATTATGAAGAGA 36374958 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | ||| || || || || ||| || | ||||||| || | || ||||| || Sbjct 36374957 CACACCGATTCCTCCAGCTGATTTGCTGATCACAGCACACTCCTTCAATGTGTCATATAT 36374898 Query 48539 TCCTTCTATACTATCATCTATCATA 48563 ||||| ||||| ||||| ||||| Sbjct 36374897 GCCTTCAATACTGTCATCCTTCATA 36374873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562074890786640