Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq4825 477 3e-130 seq6 315 2e-81 seq8 237 5e-58 seq4 132 1e-26 seq36 104 7e-18 >seq4825 Length=155848 Score = 477 bits (528), Expect = 3e-130 Identities = 700/985 (71%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || || || |||||||| || | |||||||| || || | Sbjct 1277 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1218 Query 25862 ATGATACCCTGCTTACTCG-CAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCAC 25919 ||||| |||| ||| | | | || ||| | ||| ||||| | |||||||| || || | Sbjct 1217 ATGAT-CCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATTGCTGCTC 1160 Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979 | || |||||||| ||||| || ||||| || ||||| || || || | || || |||| Sbjct 1159 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGCAACA 1100 Query 25980 ATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGA 26039 |||| || || || || | | || | ||| || || || | || ||||| || | Sbjct 1099 ATATTATTTCCGGTGCCATTATTCCGACTTCTGCAGCTATAGGTTTGCACTTTTATCCAA 1040 Query 26040 TCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 |||||||||| | | | || || ||| ||||||| || || || ||| || | || Sbjct 1039 TCTGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGTCCTTATGAATTAATCG 980 Query 26100 TCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACA 26159 | | ||||| ||| | || ||||| || || | ||||||| || || | Sbjct 979 TTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCC 920 Query 26160 GACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCG 26219 | ||||| ||| |||| ||||| |||||||||| |||| || | | || ||| | Sbjct 919 GTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 860 Query 26220 CAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTA 26279 | || ||||| | || || |||| ||||| || ||| |||||| |||||||| || | Sbjct 859 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 800 Query 26280 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACC 26339 ||||||||||||| ||||| ||| | |||||||| || || || || || || ||||||| Sbjct 799 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 740 Query 26340 CATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACG 26399 |||| || ||| || || ||||| || ||||| || | || || ||||||||| | Sbjct 739 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATG 680 Query 26400 GAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATG 26459 | |||||| || || | || ||||| ||||| | | || ||| | | Sbjct 679 GTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 620 Query 26460 GCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 26519 | || | ||| |||||||| ||||| || |||||||| || || || || || || |||| Sbjct 619 GTTACAGGTTCGGGCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 560 Query 26520 GGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTG 26579 | ||||||| || || ||||| ||||| || ||| |||||| | || ||||| || | Sbjct 559 GCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAG 500 Query 26580 CTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTA 26639 || ||||||| || || || || ||| | || || | |||||| |||| ||||| || | Sbjct 499 CTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCA 440 Query 26640 ACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTA 26699 ||||||||||||| || || ||||| || ||||| ||| | | || |||| || Sbjct 439 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATA 380 Query 26700 CATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATG 26759 | ||||||||| | | ||||| |||||||| || | |||||||||||||| ||||||| Sbjct 379 CTTGGGCTGATATCATTAACCGCGCTAACCTTGGTATGGAAGTTATGCACGAACGTAATG 320 Query 26760 CTCATAACTTTCCACTTGACTTAGC 26784 |||||||||| || || |||||||| Sbjct 319 CTCATAACTTCCCTCTAGACTTAGC 295 >seq6 Length=36610139 Score = 315 bits (348), Expect = 2e-81 Identities = 431/601 (72%), Gaps = 1/601 (0%) Strand=Plus/Plus Query 26134 AGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATA 26193 ||||||| || |||| || || | | ||||| ||| |||| ||||| ||||||||| Sbjct 34152483 AGGGAGAGAGAGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATA 34152542 Query 26194 TACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAG 26253 | |||| || | | || ||| || || ||||| | || || |||| ||||| || Sbjct 34152543 TTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAG 34152602 Query 26254 TTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCA 26313 ||| |||||| |||||||| || |||||||||||||| ||||| ||| | |||||||| Sbjct 34152603 CTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCA 34152662 Query 26314 AGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGG 26373 || || || || || || ||||||||||| || ||| || || ||||| || ||||| Sbjct 34152663 GGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGG 34152722 Query 26374 TGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAAC 26433 || | || || ||||||||| || |||||| || || | || ||||| Sbjct 34152723 CGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAAC 34152782 Query 26434 GACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAA 26493 ||||| | | || ||| | || || | ||| |||||||| ||||| || ||||| Sbjct 34152783 CACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAA 34152842 Query 26494 TATTGTCGCTGCACACGGGTACTTTGG-GAGATTAATTTTTCAGTATGCGAGTTTTAATA 26552 ||| || || || || || || ||||| ||||||| || || ||||| ||||| || | Sbjct 34152843 TATCGTAGCCGCTCATGGTTATTTTGGTCCGATTAATCTTCCAATATGCTAGTTTCAACA 34152902 Query 26553 ACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACAT 26612 || |||||| | || ||||| || ||| ||||||| || || || || ||| | || Sbjct 34152903 ACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTG 34152962 Query 26613 CTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAG 26672 || | |||||| |||| ||||| || |||||||||||||| || || ||||| || |||| Sbjct 34152963 CTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAG 34153022 Query 26673 TAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCG 26732 | ||| | | || |||| ||| ||||||||| | | ||||| |||||||| | Sbjct 34153023 TTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGCGCTAACCTTG 34153082 Query 26733 G 26733 | Sbjct 34153083 G 34153083 >seq8 Length=31745509 Score = 237 bits (262), Expect = 5e-58 Identities = 323/451 (72%), Gaps = 0/451 (0%) Strand=Plus/Plus Query 26142 AGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCAC 26201 ||||||| || || | | ||||| ||| |||| ||||| |||||||||| |||| | Sbjct 5168726 AGTGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTC 5168785 Query 26202 CACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTG 26261 | | | || ||| || || ||||| | || || |||| ||||| || ||| || Sbjct 5168786 CTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTG 5168845 Query 26262 ATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAAC 26321 |||| |||||||| || |||||||||||||| ||||| ||| | |||||||| || || | Sbjct 5168846 ATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 5168905 Query 26322 ATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTC 26381 | || || || ||||||||||| || ||| || || ||||| || ||||| || | | Sbjct 5168906 ACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCC 5168965 Query 26382 TTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGG 26441 | || ||||||||| || |||||| || || | || ||||| ||||| Sbjct 5168966 TATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAA 5169025 Query 26442 AAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCG 26501 | | || ||| | || || | ||| |||||||| ||||| || |||||||| || | Sbjct 5169026 ATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAATATCGTAG 5169085 Query 26502 CTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTT 26561 | || || || || ||||| ||||||| || || ||||| ||||| || ||| |||| Sbjct 5169086 CCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTT 5169145 Query 26562 CTCTTCATTTCTTTCTTGCTACTTGGCCGGT 26592 || | || ||||| || ||| ||||||| || Sbjct 5169146 CTTTACACTTCTTCCTAGCTGCTTGGCCTGT 5169176 >seq4 Length=35924511 Score = 132 bits (146), Expect = 1e-26 Identities = 178/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 26537 TATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTT 26596 ||||| ||||| || ||| |||||| | || ||||| || ||| ||||||| || | Sbjct 4757219 TATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAATA 4757278 Query 26597 GGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAAC 26656 | || ||| | || || | |||||| |||| ||| | || |||||||||| ||| || Sbjct 4757279 AGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGACTTTCAACCTAAATGATTTCAAT 4757338 Query 26657 TTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTATTA 26716 || ||||| || ||||| ||| | | | |||| ||| || |||||| | | Sbjct 4757339 TTCAACCAATCTGTAGTTGATAGTCAAGCCTGTGTAATTAATACTTGAGCTGATATCATT 4757398 Query 26717 AACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTT 26776 ||||| ||||| || || |||||||||| ||| | ||||||||||||||| | || Sbjct 4757399 AACCGCGCTAATCTTGGTAAAGAAGTTATGCTCGAACATAATGCTCATAACTTCTCTCTA 4757458 Query 26777 GACTTAGC 26784 |||||||| Sbjct 4757459 GACTTAGC 4757466 >seq36 Length=917149 Score = 104 bits (114), Expect = 7e-18 Identities = 193/278 (69%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 25817 ACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTA 25876 || || || || |||||||| || | |||||||| || || | ||||| |||| ||| Sbjct 329982 ACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCCTACTTT 329924 Query 25877 CTCG-CAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAG 25934 | | | || ||| | ||| ||||| | |||||||| || || || |||||||| | Sbjct 329923 ATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATTGCCATTCCTCCAGTAGATATTG 329865 Query 25935 ATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAG 25994 |||| || ||||| || ||||| || || || | || || |||||||| || || || | Sbjct 329864 ATGGTATTCGTGAACCTGTTTCAGGATCTCTACTTTATGGCAACAATATTATTTCCGGTG 329805 Query 25995 CAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCA 26054 | | | || | ||| || || || | || ||||| || ||||||||||| | Sbjct 329804 CCATTATTCCGACTTCTGCAGCTATAGGTTTGCACTTTTATCCAATCTGGGAAGCGGCTT 329745 Query 26055 CACTGGACGAGTGGCTATACAATGGCGGACCATATCAA 26092 | | || || ||| ||||||| || || || ||| || Sbjct 329744 CTGTTGATGAATGGTTATACAACGGTGGTCCTTATGAA 329707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146717991293424