Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq4825 518 1e-142 seq6 311 3e-80 seq8 280 4e-71 seq36 132 1e-26 seq4 98.7 3e-16 >seq4825 Length=155848 Score = 518 bits (574), Expect = 1e-142 Identities = 710/992 (72%), Gaps = 0/992 (0%) Strand=Plus/Plus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| |||| |||| ||| || |||||||| || || ||||| || |||||||||||||| Sbjct 286 TCAACAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCGTGCATAACTTCCATA 345 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 36083 || | || || ||||||| || ||||||||||| | || | || | |||| Sbjct 346 CCAAGGTTAGCGCGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCA 405 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 36143 || || || || ||||| || || || || || || |||||||||||| || || | | Sbjct 406 ACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAA 465 Query 36144 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTA 36203 || |||| ||| || | || ||||||||||| |||||||| |||||| || Sbjct 466 GCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAG 525 Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 526 TTGTTGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATA 585 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 ||||| || ||||||||||| ||||| | || || | || ||||||| | || Sbjct 586 TTATAAGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 645 Query 36324 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 36383 ||||| | || | || || || | | || ||||||||| |||| | || Sbjct 646 GTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCG 705 Query 36384 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 36443 |||||||| || || || || | ||| || || || ||||||||||| ||||| || ||| Sbjct 706 CCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 765 Query 36444 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 36503 || || |||| ||| || |||||||| || || || || ||||||||||||||||| || Sbjct 766 TGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAG 825 Query 36504 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 36563 || ||||| || | ||||||| ||||| |||||| || ||||||||||| |||||| Sbjct 826 CTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAA 885 Query 36564 TAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 36623 || || ||| ||||| || | ||||||||| | ||||||| ||||| | || ||| Sbjct 886 TATGCAACAGCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCTCCCACTCACGACCC 945 Query 36624 AAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTA 36683 | |||| | | ||||| | |||||| | || || | || ||| || || ||||| Sbjct 946 ATGTAACAAGCTACACCAAGTAAAAAGTGTAGAACGATTAATTCATAAGGACCACCGTTG 1005 Query 36684 TATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 36743 |||||||| || || | | || |||||||||||||| || ||||| | ||| || || Sbjct 1006 TATAACCATTCATCAACAGAAGCCGCTTCCCAGATTGGATAAAAGTGCAAACCTATAGCT 1065 Query 36744 TTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAG 36803 || | || | || || || || || || ||||| ||||| |||| | ||| || Sbjct 1066 GCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCCATAAAGTAGAGATCCAGAA 1125 Query 36804 ACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAAT 36863 ||||| |||||||||||||| ||||| || ||||| ||||||| || || || | |||| Sbjct 1126 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAAT 1185 Query 36864 GCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGG 36923 | | ||| || || | | ||||||||| | || |||||||| || | || || Sbjct 1186 ACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGA 1245 Query 36924 CGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 ||||| | || || || | ||||| ||| || Sbjct 1246 CGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 1277 >seq6 Length=36610139 Score = 311 bits (344), Expect = 3e-80 Identities = 429/599 (72%), Gaps = 1/599 (0%) Strand=Plus/Minus Query 36015 ACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCG 36074 || ||||| || | || || ||||||| || ||||||||||| | || | || Sbjct 34153092 ACCTCCATACCAAGGTTAGCGCGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCT 34153033 Query 36075 TTGGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAG 36134 | |||||| || || || ||||| || || || || || || |||||||||||| | Sbjct 34153032 TGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTG 34152973 Query 36135 ACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAA 36194 | || | ||| |||| ||| || | || ||||||||||| |||||||| |||||| Sbjct 34152972 ATACCTAAAGCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAA 34152913 Query 36195 CTGCGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTC-CCAAAGTAGCCATGAGC 36253 || || || || |||||||| |||||||| | || ||||| || |||||||| Sbjct 34152912 GAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGGACCAAAATAACCATGAGC 34152853 Query 36254 CGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTC 36313 || || || ||||| || ||||||||||| ||||| | || || | || |||||| Sbjct 34152852 GGCTACGATATTATAAGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATTC 34152793 Query 36314 AAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAA 36373 | | || ||||| | || | || || || | | || ||||||||| || Sbjct 34152792 ATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAA 34152733 Query 36374 TAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATT 36433 || | || |||||||| || || || || | ||| || || || ||||||||||| || Sbjct 34152732 TAGGGAACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTT 34152673 Query 36434 GTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACC 36493 ||| || ||||| || |||| ||| || |||||||| || || || || ||||||||||| Sbjct 34152672 GTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACC 34152613 Query 36494 ATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAAC 36553 |||||| || || ||||| || | ||||||| ||||| |||||| || |||||||| Sbjct 34152612 ATCAGAAAAGCTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAAC 34152553 Query 36554 AGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCC 36612 ||| |||||||| || ||| ||||| || | ||||||||| | ||||||| |||| Sbjct 34152552 AGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCTCCC 34152494 >seq8 Length=31745509 Score = 280 bits (310), Expect = 4e-71 Identities = 341/465 (73%), Gaps = 0/465 (0%) Strand=Plus/Minus Query 36165 ACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGG 36224 || ||||||||||| |||||||| |||||| || || || || |||||||| ||| Sbjct 5169176 ACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 5169117 Query 36225 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGG 36284 ||||| | || ||||| || |||||||| || || || ||||| || ||||||||||| Sbjct 5169116 AAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGC 5169057 Query 36285 CCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAA 36344 ||||| | || || | || ||||||| | || ||||| | || | || Sbjct 5169056 CCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 5168997 Query 36345 GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCG 36404 || || | | || ||||||||| |||| | || |||||||| || || || || Sbjct 5168996 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACGCCT 5168937 Query 36405 AGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTG 36464 | ||| || || || ||||||||||| ||||| || ||||| || |||| ||| || ||| Sbjct 5168936 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 5168877 Query 36465 AAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAG 36524 ||||| || || || || ||||||||||||||||| || || ||||| || | |||||| Sbjct 5168876 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCGATTGGGTAG 5168817 Query 36525 ACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGC 36584 | ||||| |||||| || ||||||||||| |||||||| || ||| ||||| || Sbjct 5168816 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGT 5168757 Query 36585 CTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 36629 | ||||||||| | ||||||| ||||| | || |||| |||| Sbjct 5168756 CGCATACCTAGACGGAAACTAAGCTCCCACTCACGACCCATGTAA 5168712 Score = 107 bits (118), Expect = 6e-19 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 36759 ATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATA 36818 || || || || || || ||||| ||||| |||| | ||| || ||||| ||||||||| Sbjct 2878881 ATGGCACCGGAAATAATATTGTTGCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATA 2878822 Query 36819 CCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTT 36878 ||||| ||||| || ||||| ||||||| || || || | |||| | | ||| || Sbjct 2878821 CCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGTC 2878762 Query 36879 AAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTT 36938 || | | ||||||||| | || |||||||| || | || || ||||| | || || Sbjct 2878761 AATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTG 2878702 Query 36939 GTAACCCAGTCACATAA 36955 || | ||||| ||| || Sbjct 2878701 GTTATCCAGTTACAGAA 2878685 >seq36 Length=917149 Score = 132 bits (146), Expect = 1e-26 Identities = 204/291 (70%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 36665 TTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTA 36724 || ||| || || ||||| |||||||| || || | | || |||||||||||||| || Sbjct 329707 TTCATAAGGACCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCAGATTGGATA 329766 Query 36725 GAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCC 36784 ||||| | ||| || || || | || | || || || || || || ||||| || Sbjct 329767 AAAGTGCAAACCTATAGCTGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCC 329826 Query 36785 ATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGC 36844 ||| |||| | |||||| ||||| |||||||||||||| ||||| || ||||| || Sbjct 329827 ATAAAGTAGAGATCCTGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAATGGC 329886 Query 36845 AACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCC 36904 || || || || | |||| | | ||| || || | | ||||||||| | || || Sbjct 329887 AATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACC 329946 Query 36905 AAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 |||||| || | || || ||||| | || || || | | ||| ||| || Sbjct 329947 AAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCTAGTTACAGAA 329997 >seq4 Length=35924511 Score = 98.7 bits (108), Expect = 3e-16 Identities = 176/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| |||| |||| ||| || | |||||| || || ||| | || |||||||||| | Sbjct 4757475 TCAACAGCAGCTAAGTCTAGAGAGAAGTTATGAGCATTATGTTCGAGCATAACTTCTTTA 4757416 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 36083 || | | || ||||||| || ||||| ||||| | || | | | |||| Sbjct 4757415 CCAAGATTAGCGCGGTTAATGATATCAGCTCAAGTATTAATTACACAGGCTTGACTATCA 4757356 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 36143 || || || || ||||| || || | || || || |||| ||||||| || || | | Sbjct 4757355 ACTACAGATTGGTTGAAATTGAAATCATTTAGGTTGAAAGTCATAGTGCTGATACCTAAA 4757296 Query 36144 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTA 36203 || |||| ||| || | | || ||||||||||| |||||||| |||||| || Sbjct 4757295 GCAGTAAACCAGATACTTATTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAG 4757236 Query 36204 TTATTAAAGCTAGCATA 36220 || || || |||||||| Sbjct 4757235 TTGTTGAAACTAGCATA 4757219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150445777646404