Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq4825 572 5e-159 seq6 334 2e-87 seq8 284 4e-72 seq36 161 3e-35 >seq4825 Length=155848 Score = 572 bits (634), Expect = 5e-159 Identities = 728/996 (73%), Gaps = 8/996 (1%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| |||| |||| || || |||||||| |||||||| ||||||||||| ||||||||| Sbjct 286 TCAACAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCGTGCATAACTTCCATA 345 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGC-TAGAGT- 5303 |||||||| || ||||| | || ||| |||||||| || || || || | || | Sbjct 346 CCAAGGTTAGCGCGGTTAATGATATCAGCCCAAGTATTAA---TTACACGGCCTTGACTA 402 Query 5304 -CAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCC 5362 |||| || || || ||||| || || || || || || |||||||||||| ||| || Sbjct 403 TCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCT 462 Query 5363 ATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGG 5422 | || |||| ||| || | || || ||||||| ||| |||||||| |||||| ||| Sbjct 463 AAAGCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGA 522 Query 5423 CTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACA 5482 ||||| || |||||||| |||||||| | || ||||| || |||||||| || || Sbjct 523 GAGTTGTTGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACG 582 Query 5483 ATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCA 5542 || ||||| |||||||| ||||| ||||| | || || | || ||| | | Sbjct 583 ATATTATAAGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATTCATTTTCT 642 Query 5543 GTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCT 5602 || ||||| | || | ||| || || | | |||||||||||| || | | Sbjct 643 GTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAA 702 Query 5603 CCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCT 5662 || |||||||| ||||| || || | |||||| || || ||||||||||| ||||| || Sbjct 703 CCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 762 Query 5663 GCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTG 5722 ||||||||||| | ||| ||||| |||||||||||||| || ||||||||||||||| Sbjct 763 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 822 Query 5723 AAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGC 5781 || ||||| || |||| ||||| | || || || | |||| || || ||||| || || Sbjct 823 AAGCTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGC 881 Query 5782 TGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCG 5841 ||||||||| || |||||| |||||||| |||| | | ||||||| ||||| | || Sbjct 882 TGAATATGCAACAGCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCTCCCACTCACG 941 Query 5842 TCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCC 5901 |||| |||| || | ||||| | ||||| | |||| | || || || || || Sbjct 942 ACCCATGTAACAAGCTACACCAAGTAAAAAGTGTAGAACGATTAATTCATAAGGACCACC 1001 Query 5902 ATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAAT 5961 ||||| | ||||||||| | | || ||||||||||| ||||| ||||| || || || Sbjct 1002 GTTGTATAACCATTCATCAACAGAAGCCGCTTCCCAGATTGGATAAAAGTGCAAACCTAT 1061 Query 5962 TGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCC 6021 || || | || | || ||| || || || || ||||| ||||| ||||||||||| Sbjct 1062 AGCTGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCCATAAAGTAGAGATCC 1121 Query 6022 TGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATAT 6081 | || |||||||| || || || || || ||||| || ||||| | ||| || | || Sbjct 1122 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAAT 1181 Query 6082 AAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATA 6141 |||| ||| ||||||||| || | | || ||||| || ||||||||||| || | || Sbjct 1182 AAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTA 1241 Query 6142 GAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || ||||| | |||||| || | ||||| |||||| Sbjct 1242 AAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 1277 >seq6 Length=36610139 Score = 334 bits (370), Expect = 2e-87 Identities = 440/603 (73%), Gaps = 9/603 (1%) Strand=Plus/Minus Query 5237 ACTTCCATACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCG 5296 || |||||||||||||| || ||||| | || ||| |||||||| || || || | Sbjct 34153092 ACCTCCATACCAAGGTTAGCGCGGTTAATGATATCAGCCCAAGTATTAA---TTACACGG 34153036 Query 5297 C-TAGAGT--CAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTG 5353 | | || | |||| || || || ||||| || || || || || || |||||||||||| Sbjct 34153035 CCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTG 34152976 Query 5354 GAGATTCCCATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGT 5413 ||| || | || |||| ||| || | || || ||||||| ||| |||||||| ||| Sbjct 34152975 CTGATACCTAAAGCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGT 34152916 Query 5414 AAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTC-CCAAAGTAGCCATG 5472 ||| ||| ||||| || |||||||| |||||||| | || ||||| || ||||| Sbjct 34152915 AAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGGACCAAAATAACCATG 34152856 Query 5473 AGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGA 5532 ||| || || || ||||| |||||||| ||||| ||||| | || || | || ||| Sbjct 34152855 AGCGGCTACGATATTATAAGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGA 34152796 Query 5533 AGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGC 5592 | | || ||||| | || | ||| || || | | |||||||||||| Sbjct 34152795 TTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACT 34152736 Query 5593 GAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGAT 5652 || | | || |||||||| ||||| || || | |||||| || || ||||||||||| Sbjct 34152735 AAATAGGGAACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGAT 34152676 Query 5653 ATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCAT 5712 ||||| || ||||||||||| | ||| ||||| |||||||||||||| || |||||||| Sbjct 34152675 GTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCAT 34152616 Query 5713 ACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGG 5771 ||||||| || ||||| || |||| ||||| | || || || | ||||| | || | Sbjct 34152615 ACCATCAGAAAAGCTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTAG-CAGCTG 34152557 Query 5772 CAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTT 5831 |||| || ||||||||||| || |||||| |||||||| |||| | | ||||||| | Sbjct 34152556 CAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCT 34152497 Query 5832 CCC 5834 ||| Sbjct 34152496 CCC 34152494 Score = 87.8 bits (96), Expect = 5e-13 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| |||| |||| || || |||||||| |||||||| ||||||||||| ||||||||| Sbjct 7295972 TCAACAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCGTGCATAACTTCCATA 7295913 Query 5246 CCAAGGTTGGCACGG 5260 |||||||| |||||| Sbjct 7295912 CCAAGGTT-GCACGG 7295899 >seq8 Length=31745509 Score = 284 bits (314), Expect = 4e-72 Identities = 344/466 (74%), Gaps = 2/466 (0%) Strand=Plus/Minus Query 5387 ACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGG 5446 || ||||||| ||| |||||||| |||||| ||| ||||| || |||||||| ||| Sbjct 5169176 ACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 5169117 Query 5447 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGG 5506 ||||| | || ||||| || |||||||| || || || ||||| |||||||| ||||| Sbjct 5169116 AAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGC 5169057 Query 5507 CCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAA 5566 ||||| | || || | || ||| | | || ||||| | || | ||| Sbjct 5169056 CCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 5168997 Query 5567 GTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCG 5626 || || | | |||||||||||| || | | || |||||||| ||||| || || Sbjct 5168996 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACGCCT 5168937 Query 5627 AGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTA 5686 | |||||| || || ||||||||||| ||||| || ||||||||||| | ||| ||||| Sbjct 5168936 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 5168877 Query 5687 AAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTAT 5746 |||||||||||||| || ||||||||||||||| || ||||| || |||| ||||| Sbjct 5168876 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCGATTGGGTAG 5168817 Query 5747 ACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGG 5805 | || || || | ||||| | || ||||| || ||||||||||| || |||||| || Sbjct 5168816 ATCAAGAAAACAGCAGTAG-CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGG 5168758 Query 5806 TCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAA 5851 |||||| |||| | | ||||||| ||||| | || |||| |||| Sbjct 5168757 TCGCATACCTAGACGGAAACTAAGCTCCCACTCACGACCCATGTAA 5168712 Score = 136 bits (150), Expect = 1e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 5980 AACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTAT 6039 || ||| || || || || ||||| ||||| ||||||||||| | || |||||||| || Sbjct 2878882 AATGGCACCGGAAATAATATTGTTGCCATAAAGTAGAGATCCAGAAACAGGTTCACGAAT 2878823 Query 6040 GCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGT 6099 || || || || ||||| || ||||| | ||| || | |||||| ||| ||||||||| Sbjct 2878822 ACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGT 2878763 Query 6100 TAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCT 6159 || | | || ||||| || ||||||||||| || | || || ||||| | |||||| Sbjct 2878762 CAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCT 2878703 Query 6160 AGTAACCCAGTCACAGAA 6177 || | ||||| |||||| Sbjct 2878702 GGTTATCCAGTTACAGAA 2878685 >seq36 Length=917149 Score = 161 bits (178), Expect = 3e-35 Identities = 208/287 (72%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 5891 TATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAG 5950 || || || || ||||| | ||||||||| | | || ||||||||||| ||||| ||| Sbjct 329711 TAAGGACCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCAGATTGGATAAAAG 329770 Query 5951 TGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAG 6010 || || || || || || | || | || ||| || || || || ||||| ||||| Sbjct 329771 TGCAAACCTATAGCTGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCCATAA 329830 Query 6011 AGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACG 6070 ||||||||||||| || |||||||| || || || || || ||||| || || | | Sbjct 329831 AGTAGAGATCCTGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAATGGCAATG 329890 Query 6071 AATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAAC 6130 || || | |||||| ||| ||||||||| || | | || ||||| || ||||||||| Sbjct 329891 AAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAAC 329950 Query 6131 CACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || || | || || ||||| | |||||| || | | ||| |||||| Sbjct 329951 CATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCTAGTTACAGAA 329997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152640851842236