Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq4825 522 8e-144 seq6 311 3e-80 seq8 280 4e-71 seq36 141 3e-29 seq4 107 6e-19 >seq4825 Length=155848 Score = 522 bits (578), Expect = 8e-144 Identities = 711/992 (72%), Gaps = 0/992 (0%) Strand=Plus/Plus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| ||| |||||||| ||||||||||| || || ||||| || |||||||||||||| Sbjct 286 TCAACAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCGTGCATAACTTCCATA 345 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 25563 || | || || ||||||| || ||||||||||| | || | || | |||| Sbjct 346 CCAAGGTTAGCGCGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCA 405 Query 25564 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 25623 || || || || ||||| || || || || || || |||||||||||| || || | | Sbjct 406 ACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAA 465 Query 25624 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTA 25683 || |||| ||| || | || ||||||||||| |||||||| |||||| ||| Sbjct 466 GCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAG 525 Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || || || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 526 TTGTTGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATA 585 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803 ||||| || ||||||||||| ||||| | || || | || ||||||| | || Sbjct 586 TTATAAGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 645 Query 25804 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 25863 ||||| | || | || || || | | || ||||||||| |||| | || Sbjct 646 GTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCG 705 Query 25864 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 25923 |||||||| || || || || | ||| || || || ||||||||||| ||||| || ||| Sbjct 706 CCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 765 Query 25924 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 25983 || || |||| ||| || |||||||| || || || || ||||||||||||||||| || Sbjct 766 TGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAG 825 Query 25984 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 26043 || ||||| || | ||||||| ||||| |||||| || ||||||||||| |||||| Sbjct 826 CTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAA 885 Query 26044 TAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 26103 || || ||| ||||| || | ||| ||||| | ||||||| ||||| | || ||| Sbjct 886 TATGCAACAGCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCTCCCACTCACGACCC 945 Query 26104 AAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTA 26163 | |||| | | || | | |||||| | || || | || ||| || |||||||| Sbjct 946 ATGTAACAAGCTACACCAAGTAAAAAGTGTAGAACGATTAATTCATAAGGACCACCGTTG 1005 Query 26164 TACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 26223 || ||||| || || | | || |||||||||||||| || ||||| | ||| || || Sbjct 1006 TATAACCATTCATCAACAGAAGCCGCTTCCCAGATTGGATAAAAGTGCAAACCTATAGCT 1065 Query 26224 TTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAG 26283 ||| | ||| | || || || || || || ||||| ||||| |||| | ||| || Sbjct 1066 GCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCCATAAAGTAGAGATCCAGAA 1125 Query 26284 ACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAAT 26343 ||||| |||||||||||||| ||||| || ||||| ||||||| || || || | |||| Sbjct 1126 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAAT 1185 Query 26344 GCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGG 26403 | | ||| || || | | ||||||||| | || |||||||| || | || || Sbjct 1186 ACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGA 1245 Query 26404 CGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 ||||| | || || || | ||||| ||| || Sbjct 1246 CGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 1277 >seq6 Length=36610139 Score = 311 bits (344), Expect = 3e-80 Identities = 429/599 (72%), Gaps = 1/599 (0%) Strand=Plus/Minus Query 25495 ACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCG 25554 || ||||| || | || || ||||||| || ||||||||||| | || | || Sbjct 34153092 ACCTCCATACCAAGGTTAGCGCGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCT 34153033 Query 25555 TTGGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAG 25614 | |||||| || || || ||||| || || || || || || |||||||||||| | Sbjct 34153032 TGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTG 34152973 Query 25615 ACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAA 25674 | || | ||| |||| ||| || | || ||||||||||| |||||||| |||||| Sbjct 34152972 ATACCTAAAGCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAA 34152913 Query 25675 CTACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTC-CCAAAGTAGCCATGAGC 25733 ||| || || || |||||||| |||||||| | || ||||| || |||||||| Sbjct 34152912 GAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGGACCAAAATAACCATGAGC 34152853 Query 25734 CGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTC 25793 || || || ||||| || ||||||||||| ||||| | || || | || |||||| Sbjct 34152852 GGCTACGATATTATAAGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATTC 34152793 Query 25794 AAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAA 25853 | | || ||||| | || | || || || | | || ||||||||| || Sbjct 34152792 ATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAA 34152733 Query 25854 TAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATT 25913 || | || |||||||| || || || || | ||| || || || ||||||||||| || Sbjct 34152732 TAGGGAACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTT 34152673 Query 25914 GTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACC 25973 ||| || ||||| || |||| ||| || |||||||| || || || || ||||||||||| Sbjct 34152672 GTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACC 34152613 Query 25974 ATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAAC 26033 |||||| || || ||||| || | ||||||| ||||| |||||| || |||||||| Sbjct 34152612 ATCAGAAAAGCTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAAC 34152553 Query 26034 AGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCC 26092 ||| |||||||| || ||| ||||| || | ||| ||||| | ||||||| |||| Sbjct 34152552 AGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCTCCC 34152494 >seq8 Length=31745509 Score = 280 bits (310), Expect = 4e-71 Identities = 341/465 (73%), Gaps = 0/465 (0%) Strand=Plus/Minus Query 25645 ACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGG 25704 || ||||||||||| |||||||| |||||| ||| || || || |||||||| ||| Sbjct 5169176 ACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 5169117 Query 25705 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGG 25764 ||||| | || ||||| || |||||||| || || || ||||| || ||||||||||| Sbjct 5169116 AAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGC 5169057 Query 25765 CCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAA 25824 ||||| | || || | || ||||||| | || ||||| | || | || Sbjct 5169056 CCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 5168997 Query 25825 GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCG 25884 || || | | || ||||||||| |||| | || |||||||| || || || || Sbjct 5168996 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACGCCT 5168937 Query 25885 AGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTG 25944 | ||| || || || ||||||||||| ||||| || ||||| || |||| ||| || ||| Sbjct 5168936 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 5168877 Query 25945 AAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAG 26004 ||||| || || || || ||||||||||||||||| || || ||||| || | |||||| Sbjct 5168876 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCGATTGGGTAG 5168817 Query 26005 ACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGC 26064 | ||||| |||||| || ||||||||||| |||||||| || ||| ||||| || Sbjct 5168816 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGT 5168757 Query 26065 CTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109 | ||| ||||| | ||||||| ||||| | || |||| |||| Sbjct 5168756 CGCATACCTAGACGGAAACTAAGCTCCCACTCACGACCCATGTAA 5168712 Score = 113 bits (124), Expect = 1e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26206 AAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCA 26265 ||||| | ||| || || ||| | ||| | || || || || || || ||||| ||| Sbjct 2878914 AAGTGCAAACCTATAGCTGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCCA 2878855 Query 26266 TAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCA 26325 || |||| | ||| || ||||| |||||||||||||| ||||| || ||||| |||||| Sbjct 2878854 TAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCA 2878795 Query 26326 ACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCA 26385 | || || || | |||| | | ||| || || | | ||||||||| | || ||| Sbjct 2878794 ATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCA 2878735 Query 26386 AACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 ||||| || | || || ||||| | || || || | ||||| ||| || Sbjct 2878734 AACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 2878685 >seq36 Length=917149 Score = 141 bits (156), Expect = 3e-29 Identities = 206/291 (71%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 26145 TTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTA 26204 || ||| || |||||||| || ||||| || || | | || |||||||||||||| || Sbjct 329707 TTCATAAGGACCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCAGATTGGATA 329766 Query 26205 GAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCC 26264 ||||| | ||| || || ||| | ||| | || || || || || || ||||| || Sbjct 329767 AAAGTGCAAACCTATAGCTGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCC 329826 Query 26265 ATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGC 26324 ||| |||| | |||||| ||||| |||||||||||||| ||||| || ||||| || Sbjct 329827 ATAAAGTAGAGATCCTGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAATGGC 329886 Query 26325 AACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCC 26384 || || || || | |||| | | ||| || || | | ||||||||| | || || Sbjct 329887 AATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACC 329946 Query 26385 AAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 |||||| || | || || ||||| | || || || | | ||| ||| || Sbjct 329947 AAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCTAGTTACAGAA 329997 >seq4 Length=35924511 Score = 107 bits (118), Expect = 6e-19 Identities = 178/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| ||| |||||||| |||| |||||| || || ||| | || |||||||||| | Sbjct 4757475 TCAACAGCAGCTAAGTCTAGAGAGAAGTTATGAGCATTATGTTCGAGCATAACTTCTTTA 4757416 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 25563 || | | || ||||||| || ||||| ||||| | || | | | |||| Sbjct 4757415 CCAAGATTAGCGCGGTTAATGATATCAGCTCAAGTATTAATTACACAGGCTTGACTATCA 4757356 Query 25564 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 25623 || || || || ||||| || || | || || || |||| ||||||| || || | | Sbjct 4757355 ACTACAGATTGGTTGAAATTGAAATCATTTAGGTTGAAAGTCATAGTGCTGATACCTAAA 4757296 Query 25624 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTA 25683 || |||| ||| || | | || ||||||||||| |||||||| |||||| ||| Sbjct 4757295 GCAGTAAACCAGATACTTATTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAG 4757236 Query 25684 TTATTAAAGCTAGCATA 25700 || || || |||||||| Sbjct 4757235 TTGTTGAAACTAGCATA 4757219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151984889436776