Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq3 136 5e-27 >seq3 Length=50312079 Score = 136 bits (150), Expect = 5e-27 Identities = 353/532 (66%), Gaps = 7/532 (1%) Strand=Plus/Minus Query 37168 ACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAA 37227 |||| | |||||||||||||||||| | ||| ||||| || |||| ||||| || | Sbjct 34659068 ACAACATACATGCAAAATCACAATGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGA 34659009 Query 37228 AGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA- 37286 | || ||||| ||||| | || || || || | |||||| || || ||| ||| ||| Sbjct 34659008 AAGTCAATCCGGGCATAAGCCCCCTCTTCTTCAGCCAAAAAATCGC-GCAGAAGCTCCCC 34658950 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA 37346 || || ||||| ||||| || ||||| || | || | | | | ||| ||| Sbjct 34658949 GAGAAAAAAATCCCTTCCACACAAGCAAACGCAATAATCC-TCTCCGCAAACG---ACTC 34658894 Query 37347 TAATC-AGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTC 37405 || | |||||| | | | ||| | ||||| | ||||| ||| || || Sbjct 34658893 CCCTCCATCAATCCACCTCATCGCCCACTTGGCCTTCTTCTCGACACACGGAATCGTCTC 34658834 Query 37406 AATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAA 37465 ||| || | || | || || || ||| | |||||| | || | | || Sbjct 34658833 AATCGCCCTGAACAACCTCGCCTTCTCCTCCGAATCCTTAATATAACTCTCCAACAACAA 34658774 Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGC 37525 ||||||||| || || |||||||| || || || |||||||| ||||||||| ||| || Sbjct 34658773 ACTATACATCTCCGAATGAATATTCTCTATCGCAATCTGAAACCCATAAAAAGCCCTCGC 34658714 Query 37526 TTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATC 37585 || | | || || || || | ||||||| || || || || || || ||||| Sbjct 34658713 CTCCGCCACCTGCACCTCCTTCATAAACCTCCCGGCCAAATTCTCGAGCACAATGCCATC 34658654 Query 37586 ACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTT 37645 | ||| || || ||||| ||||||| | ||||| || | |||||| | || Sbjct 34658653 AGAAGCGGCGAAAAAAGCGAGAACATGGGTAATAAAGTGCTTCTCATCAGAAGTCAAAGC 34658594 Query 37646 TTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCaaaaa 37697 || ||| | | | |||||| |||||||| ||||| || ||||||| ||| Sbjct 34658593 TTCCCAGTGAACATTATCTTGAGATAAATCGACTTCCTCGGCGGTCCAGAAA 34658542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592281068489040