Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq4825 616 2e-171 seq6 412 4e-110 seq8 343 2e-89 seq4 156 5e-33 seq36 152 6e-32 seq1 113 5e-20 >seq4825 Length=155848 Score = 616 bits (682), Expect = 2e-171 Identities = 709/953 (74%), Gaps = 6/953 (1%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| || | | ||| | || || || || Sbjct 1235 GGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATC 1176 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || |||||||| ||||| |||||||| | ||||||||| | || || Sbjct 1175 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1116 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || ||||| ||||| || || || ||||| | |||| | ||| ||||| ||| Sbjct 1115 CTACTTTATGGCAACAATATTATTTCCGGTGCCATTATTCCGACTTCTGCAGCTATAGGT 1056 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | ||||| ||||| ||||||||||| || || ||||||| ||||| || || ||||| Sbjct 1055 TTGCACTTTTATCCAATCTGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGT 996 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840 |||| || | | || | ||||| | | || | | ||| |||||| || Sbjct 995 CCTTATGAATTAATCGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 936 Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900 ||||| ||| || ||| |||||||||| |||||||| ||||||||| || || || Sbjct 935 TGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCT 876 Query 162901 GTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162960 || | || || ||||| |||||| |||| || |||||||||| || ||||| Sbjct 875 GTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGAT 816 Query 162961 GCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCAC 163020 | |||||||| || || ||||||||||| |||| |||| | || ||||| || |||||| Sbjct 815 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAC 756 Query 163021 AACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTC 163080 |||||||| |||||||| || || ||| | || || || ||||||||||| ||||| || Sbjct 755 AACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTA 696 Query 163081 TTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAA 163140 |||||||||||||| |||||| | || || ||| | | ||||| ||||| || || | Sbjct 695 TTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAAT 636 Query 163141 GAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCT 163200 || || || | ||||| | |||||| ||||||||||| ||||| || || || || Sbjct 635 GAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAATATCGTAGCC 576 Query 163201 GCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCA 163260 |||||||| || ||||| || || |||||||| ||||| |||||||||||| ||||| Sbjct 575 GCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCT 516 Query 163261 CTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTG 163320 | ||||||||||| ||||| | ||||| || | |||||||| ||||| | ||| | Sbjct 515 TTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATC 456 Query 163321 TCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCA 163377 |||||||| |||||||| || |||||||| ||||||||||| || ||||| | Sbjct 455 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA 396 Query 163378 GGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAA 163437 || || || ||| ||||||||| |||||| ||||| | || |||||||||||| Sbjct 395 GGCCGT---GTAATTAATACTTGGGCTGATATCATTAACCGCGCTAACCTTGGTATGGAA 339 Query 163438 GTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 ||||||||||| ||||||||||| |||||||| || ||| | ||||||| ||| Sbjct 338 GTTATGCACGAACGTAATGCTCATAACTTCCCTCTAGACTTAGCTGCTGTTGA 286 >seq6 Length=36610139 Score = 412 bits (456), Expect = 4e-110 Identities = 456/605 (75%), Gaps = 7/605 (1%) Strand=Plus/Plus Query 162839 AGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 162898 || |||| ||| || ||| |||||||||| |||||||| ||||||||| || || | Sbjct 34152491 AGAGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTC 34152550 Query 162899 CAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 162958 | || | || || ||||| |||||| |||| || |||||||||| || |||| Sbjct 34152551 CTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTG 34152610 Query 162959 ACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGC 163018 | | |||||||| || || ||||||||||| |||| |||| | || ||||| || |||| Sbjct 34152611 ATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 34152670 Query 163019 ACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCAC 163078 |||||||||| |||||||| || || ||| | || || || ||||||||||| ||||| | Sbjct 34152671 ACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCC 34152730 Query 163079 TCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGC 163138 | |||||||||||||| |||||| | || || ||| | | ||||| ||||| || || Sbjct 34152731 TATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAA 34152790 Query 163139 AAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTG 163198 | || || || | ||||| | |||||| ||||||||||| ||||| || || || | Sbjct 34152791 ATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAATATCGTAG 34152850 Query 163199 CTGCTCATGGATACTTTGGT-CGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGT 163257 | |||||||| || |||||| || || |||||||| ||||| |||||||||||| ||| Sbjct 34152851 CCGCTCATGGTTATTTTGGTCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGT 34152910 Query 163258 TCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGT 163317 || | ||||||||||| ||||| | ||||| || | |||||||| ||||| | ||| Sbjct 34152911 TCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGT 34152970 Query 163318 GTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---C 163374 | |||||||| |||||||| || |||||||| ||||||||||| || ||||| Sbjct 34152971 ATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGT 34153030 Query 163375 GCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATG 163434 ||| || || ||| ||||||||| |||||| ||||| | || ||||||||| Sbjct 34153031 CAAGGCCGT---GTAATTAATACTTGGGCTGATATCATTAACCGCGCTAACCTTGGTATG 34153087 Query 163435 GAAGT 163439 || || Sbjct 34153088 GAGGT 34153092 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 163426 CTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 ||||||||||||||||||||||| ||||||||||| |||||||| || ||| | |||||| Sbjct 7295908 CTTGGTATGGAAGTTATGCACGAACGTAATGCTCATAACTTCCCTCTAGACTTAGCTGCT 7295967 Query 163486 GCTGA 163490 | ||| Sbjct 7295968 GTTGA 7295972 >seq8 Length=31745509 Score = 343 bits (380), Expect = 2e-89 Identities = 351/458 (77%), Gaps = 0/458 (0%) Strand=Plus/Plus Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891 |||||| ||||||| ||| || ||| |||||||||| |||||||| ||||||||| Sbjct 5168719 GGTCGTGAGTGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATAT 5168778 Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951 || || || || | || || ||||| |||||| |||| || |||||||||| Sbjct 5168779 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGC 5168838 Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011 || ||||| | |||||||| || || ||||||||||| |||| |||| | || ||||| Sbjct 5168839 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAG 5168898 Query 163012 GCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGT 163071 || |||||||||||||| |||||||| || || ||| | || || || ||||||||||| Sbjct 5168899 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 5168958 Query 163072 GGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACT 163131 ||||| || |||||||||||||| |||||| | || || ||| | | ||||| ||||| Sbjct 5168959 GGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACC 5169018 Query 163132 ACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAAC 163191 || || | || || || | ||||| | |||||| ||||||||||| ||||| || Sbjct 5169019 ACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAAT 5169078 Query 163192 ATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAAC 163251 || || || |||||||| || ||||| || || |||||||| ||||| |||||||||| Sbjct 5169079 ATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTCAACAAC 5169138 Query 163252 TCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGT 163289 || ||||| | ||||||||||| ||||| | ||||| Sbjct 5169139 TCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGT 5169176 Score = 105 bits (116), Expect = 7e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| || | | ||| | || || || || Sbjct 2878727 GGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATC 2878786 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || |||||||| ||||| |||||||| | ||||||||| | || || Sbjct 2878787 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 2878846 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || ||||| ||||| || || || ||||| | |||| | ||| ||||| ||| Sbjct 2878847 CTACTTTATGGCAACAATATTATTTCCGGTGCCATTATTCCGACTTCTGCAGCTATAGGT 2878906 Query 162721 CTTCACTT 162728 | ||||| Sbjct 2878907 TTGCACTT 2878914 >seq4 Length=35924511 Score = 156 bits (172), Expect = 5e-33 Identities = 192/263 (73%), Gaps = 12/263 (5%) Strand=Plus/Plus Query 163234 TATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTC 163293 ||||| |||||||||||| ||||| | ||||||||||| ||||| | ||||| | Sbjct 4757219 TATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAATA 4757278 Query 163294 TGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAAC 163353 | |||||||| ||||| | ||| | |||||| | |||||||| || | |||||| Sbjct 4757279 AGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGACTTTCAACCTAAATGATTTCAAT 4757338 Query 163354 TTCAACCAATCCGTCGTTGACGCAGGTGGTAAA------GTGATTCCTACTTGGGCAGAT 163407 ||||||||||| || ||||| | || || || ||| |||||| || ||| Sbjct 4757339 TTCAACCAATCTGTAGTTGA------TAGTCAAGCCTGTGTAATTAATACTTGAGCTGAT 4757392 Query 163408 ATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTC 163467 ||| ||||| | || ||||||| |||||||||| ||| | ||||||||| |||||| Sbjct 4757393 ATCATTAACCGCGCTAATCTTGGTAAAGAAGTTATGCTCGAACATAATGCTCATAACTTC 4757452 Query 163468 CCACTTGACCTTGCTGCTGCTGA 163490 | || ||| | ||||||| ||| Sbjct 4757453 TCTCTAGACTTAGCTGCTGTTGA 4757475 >seq36 Length=917149 Score = 152 bits (168), Expect = 6e-32 Identities = 180/244 (74%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| || | | ||| | || || || || Sbjct 329955 GGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATC 329896 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| |||||||| ||||| |||||||| | ||||||||| |||| || Sbjct 329895 GCCTTCATTGCCATTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCAGGATCT 329836 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || ||||| ||||| || || || ||||| | |||| | ||| ||||| ||| Sbjct 329835 CTACTTTATGGCAACAATATTATTTCCGGTGCCATTATTCCGACTTCTGCAGCTATAGGT 329776 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | ||||| ||||| ||||||||||| || || ||||||| ||||| || || ||||| Sbjct 329775 TTGCACTTTTATCCAATCTGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGT 329716 Query 162781 CCTT 162784 |||| Sbjct 329715 CCTT 329712 >seq1 Length=51465339 Score = 113 bits (124), Expect = 5e-20 Identities = 227/342 (66%), Gaps = 45/342 (13%) Strand=Plus/Plus Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 ||||| | |||||| ||||||||||| ||| || || || | ||||||| || || Sbjct 27733156 GGTTACAGGTTCGGGCAAGAAGAAGAAGCTTGTAATATCGTACCCACTCATGGTTATATT 27733215 Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTT 163275 ||||| || || ||||| | ||| |||||||||||| | ||| | ||||||||||| Sbjct 27733216 GGTCGATTAATATTCCAATCTGCTAGTTTCAACAACTCTCATTCTTTACACTTCTTCCTA 27733275 Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACT-GCAATGGGTGTGTCAACTATGGCATT 163334 | || |||||||| ||| || ||| | |||||||| || Sbjct 27733276 G----------------TTGTATCTGGTTTACTAGCTTAAGGTATCAGCACTATGGCTTT 27733319 Query 163335 CAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGTAAA------GT 163388 ||| || || ||||||| ||||||||||| || ||||| | || || || Sbjct 27733320 CAATCTAAATGGTTTCAGTTTCAACCAATCTGTAGTTGA------TAGTCAAGACTGTGT 27733373 Query 163389 GATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGA 163448 ||| ||||||||| |||||| |||| | || ||||||| || Sbjct 27733374 AATTAATACTTGGGCTGATATCGATAACCGTGCTAAGCTTGGTA--------AT------ 27733419 Query 163449 GCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 |||||||||| |||||||| || ||| | ||||||| ||| Sbjct 27733420 --GTAATGCTCATAACTTCCCTCTAGACTTAGCTGCTGTTGA 27733459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553051435159440