Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 113 8e-20 >seq1 Length=51465339 Score = 113 bits (124), Expect = 8e-20 Identities = 421/651 (65%), Gaps = 18/651 (3%) Strand=Plus/Plus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| ||||||||| || || ||| |||||||| |||||| | ||| || Sbjct 39365606 AAACTCCCTCTCTATCTCAACTGCATCCGCCACAATCCCCTTAACCCTCTCCTCACTCGG 39365665 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || | || | |||| | || || |||||||| | ||||| || || || Sbjct 39365666 CTTCACCCTCAATAAAT---CATACAACAAACACGCAAAGTCACAATGCAATCCCTCATC 39365722 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 || || ||| | || ||| || | |||||||| | ||| |||| || | ||| Sbjct 39365723 TCGCGAAATCAGCTCATTCGAGTAGGTCAATCCAGGCATCAGCCCTCTCTTCTTCAACCA 39365782 Query 48220 GAAAATTGCCGCGAAAGAGC---CAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGT 48276 || | ||||| || | | | ||||| || || || ||||| || ||||| Sbjct 39365783 AAACA---CCGCGCAAAAACTCCCCGAGAAAAAAATCCCTTCCACACAAGCAAACGCCAC 39365839 Query 48277 GAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTT 48336 | |||||| ||||| | | | | | | ||||| |||||||| | ||||| Sbjct 39365840 AATCCTCTCCGCGAAACACTCC--CCTCCATCA-ATCCACCTCAGCGCCCAATTCGCCTT 39365896 Query 48337 CTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTC 48396 | ||| || || || |||||||| || |||| || | | | | ||||| | || Sbjct 39365897 CCTCTCGACACACGGAATCGTCTCAATCGCCCTAAACAACCTACTCTTCTCACACGAATC 39365956 Query 48397 CGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGAT 48456 | ||||| || || ||| |||||||| || || | |||||| || ||||| Sbjct 39365957 CTTCACATACGTCTCAAGAAGCAAACTATACATCTCCGAATGTATATTCTCGATCGCGAT 39366016 Query 48457 CTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAG 48516 |||||| |||||||| ||||| ||||| |||||| || || | ||| || || | Sbjct 39366017 CTGGAAGCCGTAGAACGCCCTAGCCTCCGCCACCTGGACCTCCTTCATGAACCT-GCCGG 39366075 Query 48517 C-AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGA 48575 | |||||||| || || || || ||||| || ||||| || || || || | | || Sbjct 39366076 CGAGATTCTCGAGCACGATGCCGTCAGAAGCGGCGAAGAAAGCGAGCACGTGAGTGACGA 39366135 Query 48576 AATGGCGCTCGTTGTGGGTGAGAGCATTCCA--GCCCTGTACGTCTTTGCCCAGGTCCAC 48633 | || ||||||| | || || | | | | | || ||||| | || || Sbjct 39366136 AGTGTTTCTCGTTGGGAGTTAGGGTTTGGAAATGAGCAGT--GTCTTGCGATAAATCGAC 39366193 Query 48634 TTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 |||||| | ||||||||||| || ||||| |||||||| |||| || Sbjct 39366194 TTCTTCGGCGGTCCAGAAGGAAGCCTCGGCTTTCTTGTACATTTCCCAGAT 39366244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931476605283840