Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 8e-14 >seq1 Length=51465339 Score = 93.3 bits (102), Expect = 8e-14 Identities = 233/347 (67%), Gaps = 9/347 (3%) Strand=Plus/Minus Query 25574 ACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGA 25633 ||||| | || || ||| ||||| | || ||||| || || ||||| || || ||| Sbjct 39366147 ACGAGAAACACTTCGTCACTCACGTGCTCGCTTTCTTCGCCGCTTCTGACGGCATCGTGC 39366088 Query 25634 ACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCT 25693 ||||||||| || || |||| | ||| || ||| | |||||| | | |||| Sbjct 39366087 TCGAGAATCTCGCCGGCAGGTTCATGAAGGAGGTCCAGGTGGCGGAGGCTAGGGCGTTCT 39366028 Query 25694 ACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGA 25753 |||| |||||||| || ||||| ||| | || || ||| ||||| |||||| || Sbjct 39366027 ACGGCTTCCAGATCGCGATCGAGAATATACATTCGGAGATGTATAGTTTGCTTCTTGAGA 39365968 Query 25754 CGTACATTACAGACGTCGCC-GAGAGAGA-TCGGCTGTTTGGTGCCATCGAGCACATACC 25811 |||| | | || ||| |||| ||| | || ||||| | || || ||| || || Sbjct 39365967 CGTATGTGAAGGAT-TCGTGTGAGA-AGAGTAGGTTGTTTAGGGCGATTGAGACGATTCC 39365910 Query 25812 CAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTT 25871 | || ||||||||||| ||||| ||| |||||| | ||| | ||| Sbjct 39365909 GTGTGTCGAGAGGAAGGCGAATTGGGCGCTGAGGTGGAT----TGATGGAGGGGAGTGTT 39365854 Query 25872 TGGC-GAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTC 25917 | || ||| || | || || |||||| |||||| || || |||||| Sbjct 39365853 TCGCGGAGAGGATTGTGGCGTTTGCTTGTGTGGAAGGGATTTTTTTC 39365807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928788767437440