Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq6 82.4 6e-11 >seq3 Length=50312079 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || || || || |||||| ||| ||| ||| Sbjct 6143724 ATGCAAATCTTTGTTAAGACTCTCACTGGGAAGACGATTACCCTTGAAGTAGAAAGTTCT 6143783 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || || |||| || ||||| |||||| | ||| ||| || Sbjct 6143784 GATACAATTGACAATGTGAAAGCGAAAATTCAA-GACAAGGAGGGAATTCCCCCAGACCA 6143842 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| | || ||||| || || |||||||| ||| || || |||| ||||| || Sbjct 6143843 GCAGAGGTTGATTTTTGCTGGTAAGCAATTGGAGGATGGTAGGACATTGGCTGATTACAA 6143902 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||| ||||| ||||| || ||||||| || || |||| || || Sbjct 6143903 CATTCAAAAGGAATCCACTCTTCATCTGGTATTGAGGTTGAGAGGTGGCAT 6143953 >seq6 Length=36610139 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || || || || |||||| || || || Sbjct 34641802 ATGCAAATCTTTGTCAAGACGCTTACTGGAAAGACAATTACCTTGGAGGTAGAGAGCTCT 34641861 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| ||| ||| |||||||||||| | || |||||| Sbjct 34641862 GATACAATTGACAATGTTAAGGCAAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCAG 34641921 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | || ||||| || || || ||||| || | || |||| ||||| ||| Sbjct 34641922 CAGAGGTTGATATTTGCTGGGAAGCAGTTGGAGGACGGAAGGACATTGGCAGATTACAAC 34641981 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 |||||||| ||||| || || || ||||||| || Sbjct 34641982 ATTCAAAAGGAATCCACACTTCATTTGGTATTGAG 34642016 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || ||||| || || || ||||| ||| || || || Sbjct 34642257 AATGCAAATCTTTGTGAAGACATTGACTGGCAAGACCATCACCTTGGAGGTTGAGAGCTC 34642316 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || | ||| |||||| |||||||||||| | || |||||| Sbjct 34642317 AGATACAATTGATAATGTGAAGGCGAAAATCCAGGACAAAGAGGGAATCCCACCAGATCA 34642376 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||| | | || ||||| || || || ||||| ||| | ||| |||| || || || Sbjct 34642377 ACAGCGTTTGATTTTTGCTGGAAAGCAGTTGGAGGATGGAAGAACCCTGGCTGACTACAA 34642436 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||| || ||||| || || || ||| Sbjct 34642437 CATCCAGAAAGAGTCCACCCTTCAC 34642461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425379779019054