Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq4825 540 3e-149 seq6 289 9e-74 seq8 260 4e-65 seq36 159 1e-34 seq4 111 5e-20 >seq4825 Length=155848 Score = 540 bits (598), Expect = 3e-149 Identities = 717/989 (72%), Gaps = 10/989 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 |||||| ||||| |||||||||||||||||||| |||||||||||||| | |||||||| Sbjct 294 AGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCGTGCATAACTTCCATACCAAGGTT 353 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| ||| | || | ||| | | | ||||| Sbjct 354 AGCGCGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACA-- 411 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| ||||| || || |||||||||||| ||| || | || || Sbjct 412 -GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 470 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 || ||| || | || ||||||||||| | |||||| |||| | | ||||| Sbjct 471 AAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTT 530 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || || |||||||| Sbjct 531 GAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 590 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||||||||| || || | || || | || ||| ||| || || ||||| Sbjct 591 AGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 650 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 || || | || || || | | || ||||||||| |||| | || ||||| Sbjct 651 CCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAA 710 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 ||| || || || || | ||| || || || ||||||||||| ||||| || || ||||| Sbjct 711 TACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 770 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 ||| | |||||| ||||||||||| || || ||||||||||||||||| || || || Sbjct 771 TACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCC 830 Query 18371 TTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAA 18428 ||| || | || || | | ||||| || | || || ||||||| || || || ||||| Sbjct 831 TTGACCGATTGGGTAGATCAAGAAA-ACAGCAGTAG-CAGCTGCAACAGGAGCTGAATAT 888 Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488 |||||| |||||| || ||||||||||| | ||||||| ||||| | || |||||| Sbjct 889 GCAACAGCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCTCCCACTCACGACCCATG 948 Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548 ||| || | || | | |||||| | || || | || ||| || || ||||| ||| Sbjct 949 TAACAAGCTACACCAAGTAAAAAGTGTAGAACGATTAATTCATAAGGACCACCGTTGTAT 1008 Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608 ||||| || || | | || |||||||||||||| || ||||| | ||| || || | Sbjct 1009 AACCATTCATCAACAGAAGCCGCTTCCCAGATTGGATAAAAGTGCAAACCTATAGCTGCA 1068 Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 || | ||| | || || || || || || ||||| ||||| |||| | ||| || ||| Sbjct 1069 GAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCCATAAAGTAGAGATCCAGAAACA 1128 Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCT 18728 || |||||||||||||| || || || ||||||||||||| || || || | |||| | Sbjct 1129 GGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACA 1188 Query 18729 GTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGG 18788 | || |||||| || | | ||||||||| | || |||||||| || | ||| || ||| Sbjct 1189 GAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGG 1248 Query 18789 TTGTTTGTACTCGTAACCCAGTCACATAA 18817 || | || || || | ||||| ||| || Sbjct 1249 TTTTCGGTGCTGGTTATCCAGTTACAGAA 1277 >seq6 Length=36610139 Score = 289 bits (320), Expect = 9e-74 Identities = 426/595 (72%), Gaps = 11/595 (2%) Strand=Plus/Minus Query 17886 CCAAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCT 17942 ||||||||||| | ||| | | |||||||| ||| | || | ||| | | | Sbjct 34153083 CCAAGGTTAGCGCGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCA 34153024 Query 17943 GCTACAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCC 18002 ||||| ||||||||||| ||||| ||||| || || |||||||||||| ||| || Sbjct 34153023 ACTACA---GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCT 34152967 Query 18003 ATAGAGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTG 18062 | || |||| ||| || | || ||||||||||| | |||||| |||| | | Sbjct 34152966 AAAGCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGA 34152907 Query 18063 CTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTC-CCAAAGTAGCCATGAGCCGCAAC 18121 ||||| || |||||||| |||||||| | || ||||| || |||||||| || || Sbjct 34152906 GAGTTGTTGAAACTAGCATATTGGAAGATTAATCGGACCAAAATAACCATGAGCGGCTAC 34152847 Query 18122 AATATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTC 18181 |||||||| || ||||||||||| || || | || || | || ||| ||| || Sbjct 34152846 GATATTATAAGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATTCATTTTC 34152787 Query 18182 AGTCGTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 18241 || ||||| || || | || || || | | || ||||||||| |||| | Sbjct 34152786 TGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGA 34152727 Query 18242 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 18301 || |||||||| || || || || | ||| || || || ||||||||||| ||||| || Sbjct 34152726 ACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTC 34152667 Query 18302 GGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGA 18361 || |||||||| | |||||| ||||||||||| || || ||||||||||||||||| Sbjct 34152666 AGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 34152607 Query 18362 GAAACTCCCTTGTCCAAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGT 18419 || || ||||| || | || || | | ||||| || | || | |||||||| || || Sbjct 34152606 AAAGCTTCCTTGACCGATTGGGTAGATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGA 34152549 Query 18420 GCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCC 18474 || ||||| |||||| |||||| || ||||||||||| | ||||||| |||| Sbjct 34152548 GCTGAATATGCAACAGCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCTCCC 34152494 Score = 82.4 bits (90), Expect = 2e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 |||||| ||||| |||||||||||||||||||| |||||||||||||| | |||||||| Sbjct 7295964 AGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCGTGCATAACTTCCATACCAAGGTT 7295905 >seq8 Length=31745509 Score = 260 bits (288), Expect = 4e-65 Identities = 341/467 (73%), Gaps = 4/467 (1%) Strand=Plus/Minus Query 18027 ACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGG 18086 || ||||||||||| | |||||| |||| | | ||||| || |||||||| ||| Sbjct 5169176 ACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 5169117 Query 18087 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGG 18146 ||||| | || ||||| || |||||||| || || |||||||| || ||||||||||| Sbjct 5169116 AAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGC 5169057 Query 18147 CCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAA 18206 || || | || || | || ||| ||| || || ||||| || || | || Sbjct 5169056 CCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 5168997 Query 18207 GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCG 18266 || || | | || ||||||||| |||| | || |||||||| || || || || Sbjct 5168996 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACGCCT 5168937 Query 18267 AGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTG 18326 | ||| || || || ||||||||||| ||||| || || |||||||| | |||||| ||| Sbjct 5168936 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 5168877 Query 18327 AAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA- 18385 |||||||| || || ||||||||||||||||| || || ||||| || | || || Sbjct 5168876 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCGATTGGGTAG 5168817 Query 18386 AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACG 18444 | | ||||| || | || | |||||||| || || || ||||| |||||| |||||| | Sbjct 5168816 ATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAG 5168759 Query 18445 GGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAA 18491 | ||||||||||| | ||||||| ||||| | || ||||||||| Sbjct 5168758 GTCGCATACCTAGACGGAAACTAAGCTCCCACTCACGACCCATGTAA 5168712 Score = 131 bits (144), Expect = 5e-26 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18588 AAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCA 18647 ||||| | ||| || || ||| | ||| | || || || || || || ||||| ||| Sbjct 2878914 AAGTGCAAACCTATAGCTGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCCA 2878855 Query 18648 TAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCA 18707 || |||| | ||| || ||||| |||||||||||||| || || || |||||||||||| Sbjct 2878854 TAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCA 2878795 Query 18708 ACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCA 18767 | || || || | |||| | | || |||||| || | | ||||||||| | || ||| Sbjct 2878794 ATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCA 2878735 Query 18768 AACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 ||||| || | ||| || ||||| | || || || | ||||| ||| || Sbjct 2878734 AACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 2878685 >seq36 Length=917149 Score = 159 bits (176), Expect = 1e-34 Identities = 210/291 (72%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 18527 TTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTA 18586 || ||| || || ||||| |||||||| || || | | || |||||||||||||| || Sbjct 329707 TTCATAAGGACCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCAGATTGGATA 329766 Query 18587 GAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCC 18646 ||||| | ||| || || ||| | ||| | || || || || || || ||||| || Sbjct 329767 AAAGTGCAAACCTATAGCTGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCC 329826 Query 18647 ATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGC 18706 ||| |||| | |||||| ||||| |||||||||||||| || || || |||||| || Sbjct 329827 ATAAAGTAGAGATCCTGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAATGGC 329886 Query 18707 AACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCC 18766 || || || || | |||| | | || |||||| || | | ||||||||| | || || Sbjct 329887 AATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACC 329946 Query 18767 AAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 |||||| || | ||| || ||||| | || || || | | ||| ||| || Sbjct 329947 AAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCTAGTTACAGAA 329997 >seq4 Length=35924511 Score = 111 bits (122), Expect = 5e-20 Identities = 179/255 (70%), Gaps = 12/255 (5%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 |||||| ||||| | |||||||||||||||| | ||| |||||||||| ||||| || Sbjct 4757467 AGCTAAGTCTAGAGAGAAGTTATGAGCATTATGTTCGAGCATAACTTCTTTACCAAGATT 4757408 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGG---TAC---GACTTGTCCTCCAGCTGCTAC 17947 ||| | ||| | | ||||| || ||| ||| | |||| | || || || Sbjct 4757407 AGCGCGGTTAATGATATCAGCTCAAGTATTAATTACACAGGCTTGACTATCAACT---AC 4757351 Query 17948 AATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGA 18007 | ||||||||||| ||||| |||| || || |||| ||||||| ||| || | || Sbjct 4757350 A---GATTGGTTGAAATTGAAATCATTTAGGTTGAAAGTCATAGTGCTGATACCTAAAGC 4757294 Query 18008 GGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATT 18067 |||| ||| || | | || ||||||||||| | |||||| |||| | | || Sbjct 4757293 AGTAAACCAGATACTTATTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTT 4757234 Query 18068 GTTAAAGCTAGCATA 18082 ||| || |||||||| Sbjct 4757233 GTTGAAACTAGCATA 4757219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151309728131644