Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq4825 488 2e-133
seq6 342 1e-89
seq8 266 9e-67
seq36 120 9e-23
>seq4825
Length=155848
Score = 488 bits (540), Expect = 2e-133
Identities = 681/952 (72%), Gaps = 2/952 (0%)
Strand=Plus/Plus
Query 21476 GTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACG 21535
||| || |||||||| || || || || || ||||| || || | |||||||| || ||
Sbjct 300 GTCTAGAGGGAAGTTATGAGCATTACGTTCGTGCATAACTTCCATACCAAGGTTAGCGCG 359
Query 21536 GTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTT 21595
||||| || |||||||| || || || || | || | | | | | | |||||||||
Sbjct 360 GTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACAGATTGGTT 419
Query 21596 AAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAAT 21655
|| ||||||||||| | |||||||||||| || | || | |||| |||||| ||
Sbjct 420 GAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAGAT 479
Query 21656 ACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGC 21715
|||||| |||||||| ||||| || ||||| || | | ||| || || || || |||||
Sbjct 480 ACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGC 539
Query 21716 ATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTC 21775
|||||||||||| | || |||||||| || ||||| || || ||||| ||||| |||||
Sbjct 540 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTC 599
Query 21776 CTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAG 21835
||||| || ||| ||||||| | || || | | ||| || || || | || |
Sbjct 600 TTCTTGCCCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 659
Query 21836 TGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGC 21895
|| || |||| ||| ||||||||| || | || || ||||| || ||
Sbjct 660 ACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGC 719
Query 21896 CACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCAT 21955
|| || | ||||||||| || |||||||| || ||||||||||||||||| || | |||
Sbjct 720 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 779
Query 21956 GTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAA 22015
| ||||||| || || || || || | |||||| |||||||||| || || || |
Sbjct 780 GAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCGAT 839
Query 22016 CGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGAT 22075
|| || | | ||| |||||||| ||||| || |||||||| || || |||||| ||
Sbjct 840 TGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAAT 899
Query 22076 CCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGAC 22135
||| || | ||| ||||| || | ||||| |||||||| || ||||||||| | ||
Sbjct 900 CCAAGGTCGCATACCTAGACGGAAACTAAGCTCCCACTCACGACCCATGTAACAAGCTAC 959
Query 22136 GCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATC 22195
|||| | ||||| | ||| | | || | ||||| |||||||| | |||||||||
Sbjct 960 ACCAAGTAAAAAGTGTAGAACGATTAATTCATAAGGACCACCGTTGTATAACCATTCATC 1019
Query 22196 AAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAAC 22255
|| | ||| |||||||| ||||| || ||||| | || || || | ||||||
Sbjct 1020 AACAGAAGCCGCTTCCCAGATTGGATAAAAGTGCAAACCTATAGCTGCAGAAGTCGGAAT 1079
Query 22256 GACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGAT 22315
| ||| || || || || ||||| ||||| | || || |||| || ||||| || ||
Sbjct 1080 AATGGCACCGGAAATAATATTGTTGCCATAAAGTAGAGATCCAGAAACAGGTTCACGAAT 1139
Query 22316 TCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG- 22374
||||| || || || || || || ||| |||||||||||||| || || ||||
Sbjct 1140 ACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGT 1199
Query 22375 CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426
||| | | | || ||||| | || || |||||||| | |||||||||||
Sbjct 1200 CAATAAAGTA-GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 1250
>seq6
Length=36610139
Score = 342 bits (378), Expect = 1e-89
Identities = 444/611 (73%), Gaps = 2/611 (0%)
Strand=Plus/Minus
Query 21512 CACCTCAAAGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCC 21571
|||||| | |||||||| || ||||||| || |||||||| || || || || | ||
Sbjct 34153093 CACCTCCATACCAAGGTTAGCGCGGTTAATGATATCAGCCCAAGTATTAATTACACGGCC 34153034
Query 21572 ATCAGCAGCTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGA 21631
| | | | | | ||||||||| || ||||||||||| | |||||||||||| ||
Sbjct 34153033 TTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCT 34152974
Query 21632 CACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAG 21691
| || | |||| |||||| |||||||| |||||||| ||||| || ||||| || |
Sbjct 34152973 GATACCTAAAGCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAA 34152914
Query 21692 ACTACGGGAATTATTAAAGCTAGCATATTGGAAGAT-AAGCCGACCAAAATAGCCGTGAG 21750
| ||| || || || || ||||||||||||||||| || | |||||||||| || ||||
Sbjct 34152913 AGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGGACCAAAATAACCATGAG 34152854
Query 21751 CAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAA 21810
| || || ||||| ||||| ||||| ||||| || ||| ||||||| | || ||
Sbjct 34152853 CGGCTACGATATTATAAGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATT 34152794
Query 21811 CCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGA 21870
| | ||| || || || | || | || || |||| ||| ||||||||| |
Sbjct 34152793 CATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAA 34152734
Query 21871 ACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATAT 21930
| | || || ||||| || || || || | ||||||||| || |||||||| || |
Sbjct 34152733 ATAGGGAACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGT 34152674
Query 21931 TGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAG 21990
|||||||||||||||| || | |||| ||||||| || || || || || | ||||||
Sbjct 34152673 TGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATAC 34152614
Query 21991 CATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGA 22050
|||||||||| || || || | || || | | ||| |||||||| ||||| || |
Sbjct 34152613 CATCAGAAAAGCTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAA 34152554
Query 22051 CAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCC 22110
||||||| || || |||||| ||||| || | ||| ||||| || | ||||| ||||
Sbjct 34152553 CAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCTCCC 34152494
Query 22111 ACTCTCGTCCC 22121
||||| ||||
Sbjct 34152493 TCTCTC-TCCC 34152484
>seq8
Length=31745509
Score = 266 bits (294), Expect = 9e-67
Identities = 338/465 (73%), Gaps = 0/465 (0%)
Strand=Plus/Minus
Query 21663 ACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGG 21722
|||||||| ||||| || ||||| || | | ||| || || || || ||||||||||||
Sbjct 5169176 ACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 5169117
Query 21723 AAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGA 21782
||||| | || |||||||| || ||||| || || ||||| ||||| ||||| |||||
Sbjct 5169116 AAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGC 5169057
Query 21783 CCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGAC 21842
|| ||| ||||||| | || || | | ||| || || || | || | ||
Sbjct 5169056 CCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 5168997
Query 21843 GTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCC 21902
|| |||| ||| ||||||||| || | || || ||||| || || || ||
Sbjct 5168996 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACGCCT 5168937
Query 21903 AGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTG 21962
| ||||||||| || |||||||| || ||||||||||||||||| || | |||| |||||
Sbjct 5168936 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 5168877
Query 21963 AAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAA 22022
|| || || || || || | |||||| |||||||||| || || || | || ||
Sbjct 5168876 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCGATTGGGTAG 5168817
Query 22023 ACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGC 22082
| | ||| |||||||| ||||| || |||||||| || || |||||| ||||| ||
Sbjct 5168816 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGT 5168757
Query 22083 CTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAA 22127
| ||| ||||| || | ||||| |||||||| || |||||||||
Sbjct 5168756 CGCATACCTAGACGGAAACTAAGCTCCCACTCACGACCCATGTAA 5168712
Score = 86.0 bits (94), Expect = 2e-12
Identities = 128/179 (72%), Gaps = 2/179 (1%)
Strand=Plus/Minus
Query 22249 TCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTT 22308
|||||| | ||| || || || || ||||| ||||| | || || |||| || ||||
Sbjct 2878889 TCGGAATAATGGCACCGGAAATAATATTGTTGCCATAAAGTAGAGATCCAGAAACAGGTT 2878830
Query 22309 CTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTG 22368
| || || ||||| || || || || || || ||| |||||||||||||| || |
Sbjct 2878829 CACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAG 2878770
Query 22369 TAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426
| |||| ||| | | | || ||||| | || || |||||||| | |||||||||||
Sbjct 2878769 TTGCGGTCAATAAAGTA-GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 2878712
>seq36
Length=917149
Score = 120 bits (132), Expect = 9e-23
Identities = 183/258 (71%), Gaps = 2/258 (1%)
Strand=Plus/Plus
Query 22170 GGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGT 22229
||||| |||||||| | ||||||||||| | ||| |||||||| ||||| || |||||
Sbjct 329714 GGACCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCAGATTGGATAAAAGTGC 329773
Query 22230 AGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAAC 22289
| || || || | |||||| | ||| || || || || ||||| ||||| |
Sbjct 329774 AAACCTATAGCTGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCCATAAAGT 329833
Query 22290 AGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAG 22349
|| || || | || ||||| || || ||||| || || || || || | ||| |||
Sbjct 329834 AGAGATCCTGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAATGGCAATGAAG 329893
Query 22350 GCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCA 22408
||||||||||| || || |||| ||| | | | || ||||| | || || |||||
Sbjct 329894 GCGATAATAAATACAGAAGTTGCGGTCAATAAAGTA-GGGATCATCAAAACACCAAACCA 329952
Query 22409 TCCTACATAAAGACGGTT 22426
||| | |||||||||||
Sbjct 329953 TCCAATGTAAAGACGGTT 329970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146199621002280
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