Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq4825 488 2e-133 seq6 342 1e-89 seq8 266 9e-67 seq36 120 9e-23 >seq4825 Length=155848 Score = 488 bits (540), Expect = 2e-133 Identities = 681/952 (72%), Gaps = 2/952 (0%) Strand=Plus/Plus Query 21476 GTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACG 21535 ||| || |||||||| || || || || || ||||| || || | |||||||| || || Sbjct 300 GTCTAGAGGGAAGTTATGAGCATTACGTTCGTGCATAACTTCCATACCAAGGTTAGCGCG 359 Query 21536 GTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTT 21595 ||||| || |||||||| || || || || | || | | | | | | ||||||||| Sbjct 360 GTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACAGATTGGTT 419 Query 21596 AAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAAT 21655 || ||||||||||| | |||||||||||| || | || | |||| |||||| || Sbjct 420 GAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAGAT 479 Query 21656 ACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGC 21715 |||||| |||||||| ||||| || ||||| || | | ||| || || || || ||||| Sbjct 480 ACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGC 539 Query 21716 ATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTC 21775 |||||||||||| | || |||||||| || ||||| || || ||||| ||||| ||||| Sbjct 540 ATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTC 599 Query 21776 CTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAG 21835 ||||| || ||| ||||||| | || || | | ||| || || || | || | Sbjct 600 TTCTTGCCCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 659 Query 21836 TGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGC 21895 || || |||| ||| ||||||||| || | || || ||||| || || Sbjct 660 ACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGC 719 Query 21896 CACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCAT 21955 || || | ||||||||| || |||||||| || ||||||||||||||||| || | ||| Sbjct 720 TACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 779 Query 21956 GTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAA 22015 | ||||||| || || || || || | |||||| |||||||||| || || || | Sbjct 780 GAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCGAT 839 Query 22016 CGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGAT 22075 || || | | ||| |||||||| ||||| || |||||||| || || |||||| || Sbjct 840 TGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAAT 899 Query 22076 CCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGAC 22135 ||| || | ||| ||||| || | ||||| |||||||| || ||||||||| | || Sbjct 900 CCAAGGTCGCATACCTAGACGGAAACTAAGCTCCCACTCACGACCCATGTAACAAGCTAC 959 Query 22136 GCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATC 22195 |||| | ||||| | ||| | | || | ||||| |||||||| | ||||||||| Sbjct 960 ACCAAGTAAAAAGTGTAGAACGATTAATTCATAAGGACCACCGTTGTATAACCATTCATC 1019 Query 22196 AAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAAC 22255 || | ||| |||||||| ||||| || ||||| | || || || | |||||| Sbjct 1020 AACAGAAGCCGCTTCCCAGATTGGATAAAAGTGCAAACCTATAGCTGCAGAAGTCGGAAT 1079 Query 22256 GACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGAT 22315 | ||| || || || || ||||| ||||| | || || |||| || ||||| || || Sbjct 1080 AATGGCACCGGAAATAATATTGTTGCCATAAAGTAGAGATCCAGAAACAGGTTCACGAAT 1139 Query 22316 TCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG- 22374 ||||| || || || || || || ||| |||||||||||||| || || |||| Sbjct 1140 ACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGT 1199 Query 22375 CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 ||| | | | || ||||| | || || |||||||| | ||||||||||| Sbjct 1200 CAATAAAGTA-GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 1250 >seq6 Length=36610139 Score = 342 bits (378), Expect = 1e-89 Identities = 444/611 (73%), Gaps = 2/611 (0%) Strand=Plus/Minus Query 21512 CACCTCAAAGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCC 21571 |||||| | |||||||| || ||||||| || |||||||| || || || || | || Sbjct 34153093 CACCTCCATACCAAGGTTAGCGCGGTTAATGATATCAGCCCAAGTATTAATTACACGGCC 34153034 Query 21572 ATCAGCAGCTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGA 21631 | | | | | | ||||||||| || ||||||||||| | |||||||||||| || Sbjct 34153033 TTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCT 34152974 Query 21632 CACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAG 21691 | || | |||| |||||| |||||||| |||||||| ||||| || ||||| || | Sbjct 34152973 GATACCTAAAGCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAA 34152914 Query 21692 ACTACGGGAATTATTAAAGCTAGCATATTGGAAGAT-AAGCCGACCAAAATAGCCGTGAG 21750 | ||| || || || || ||||||||||||||||| || | |||||||||| || |||| Sbjct 34152913 AGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGGACCAAAATAACCATGAG 34152854 Query 21751 CAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAA 21810 | || || ||||| ||||| ||||| ||||| || ||| ||||||| | || || Sbjct 34152853 CGGCTACGATATTATAAGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATT 34152794 Query 21811 CCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGA 21870 | | ||| || || || | || | || || |||| ||| ||||||||| | Sbjct 34152793 CATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAA 34152734 Query 21871 ACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATAT 21930 | | || || ||||| || || || || | ||||||||| || |||||||| || | Sbjct 34152733 ATAGGGAACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGT 34152674 Query 21931 TGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAG 21990 |||||||||||||||| || | |||| ||||||| || || || || || | |||||| Sbjct 34152673 TGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATAC 34152614 Query 21991 CATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGA 22050 |||||||||| || || || | || || | | ||| |||||||| ||||| || | Sbjct 34152613 CATCAGAAAAGCTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAA 34152554 Query 22051 CAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCC 22110 ||||||| || || |||||| ||||| || | ||| ||||| || | ||||| |||| Sbjct 34152553 CAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCTCCC 34152494 Query 22111 ACTCTCGTCCC 22121 ||||| |||| Sbjct 34152493 TCTCTC-TCCC 34152484 >seq8 Length=31745509 Score = 266 bits (294), Expect = 9e-67 Identities = 338/465 (73%), Gaps = 0/465 (0%) Strand=Plus/Minus Query 21663 ACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGG 21722 |||||||| ||||| || ||||| || | | ||| || || || || |||||||||||| Sbjct 5169176 ACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 5169117 Query 21723 AAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGA 21782 ||||| | || |||||||| || ||||| || || ||||| ||||| ||||| ||||| Sbjct 5169116 AAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGC 5169057 Query 21783 CCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGAC 21842 || ||| ||||||| | || || | | ||| || || || | || | || Sbjct 5169056 CCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 5168997 Query 21843 GTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCC 21902 || |||| ||| ||||||||| || | || || ||||| || || || || Sbjct 5168996 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACGCCT 5168937 Query 21903 AGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTG 21962 | ||||||||| || |||||||| || ||||||||||||||||| || | |||| ||||| Sbjct 5168936 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 5168877 Query 21963 AAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAA 22022 || || || || || || | |||||| |||||||||| || || || | || || Sbjct 5168876 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCGATTGGGTAG 5168817 Query 22023 ACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGC 22082 | | ||| |||||||| ||||| || |||||||| || || |||||| ||||| || Sbjct 5168816 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGT 5168757 Query 22083 CTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAA 22127 | ||| ||||| || | ||||| |||||||| || ||||||||| Sbjct 5168756 CGCATACCTAGACGGAAACTAAGCTCCCACTCACGACCCATGTAA 5168712 Score = 86.0 bits (94), Expect = 2e-12 Identities = 128/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 22249 TCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTT 22308 |||||| | ||| || || || || ||||| ||||| | || || |||| || |||| Sbjct 2878889 TCGGAATAATGGCACCGGAAATAATATTGTTGCCATAAAGTAGAGATCCAGAAACAGGTT 2878830 Query 22309 CTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTG 22368 | || || ||||| || || || || || || ||| |||||||||||||| || | Sbjct 2878829 CACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAG 2878770 Query 22369 TAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 | |||| ||| | | | || ||||| | || || |||||||| | ||||||||||| Sbjct 2878769 TTGCGGTCAATAAAGTA-GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 2878712 >seq36 Length=917149 Score = 120 bits (132), Expect = 9e-23 Identities = 183/258 (71%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 22170 GGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGT 22229 ||||| |||||||| | ||||||||||| | ||| |||||||| ||||| || ||||| Sbjct 329714 GGACCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCAGATTGGATAAAAGTGC 329773 Query 22230 AGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAAC 22289 | || || || | |||||| | ||| || || || || ||||| ||||| | Sbjct 329774 AAACCTATAGCTGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCCATAAAGT 329833 Query 22290 AGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAG 22349 || || || | || ||||| || || ||||| || || || || || | ||| ||| Sbjct 329834 AGAGATCCTGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAATGGCAATGAAG 329893 Query 22350 GCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCA 22408 ||||||||||| || || |||| ||| | | | || ||||| | || || ||||| Sbjct 329894 GCGATAATAAATACAGAAGTTGCGGTCAATAAAGTA-GGGATCATCAAAACACCAAACCA 329952 Query 22409 TCCTACATAAAGACGGTT 22426 ||| | ||||||||||| Sbjct 329953 TCCAATGTAAAGACGGTT 329970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146199621002280