Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3 118 1e-21 seq1 100 3e-16 seq5 96.9 4e-15 seq4 95.1 1e-14 >seq3 Length=50312079 Score = 118 bits (130), Expect = 1e-21 Identities = 150/206 (73%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 65011 CCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCC 65070 || ||| | ||||||||||| || ||||| |||| ||| |||| | | || Sbjct 34658843 CCGTGTGTCGAGAAGAAGGCCAAGTGGGCGATGAGGTGGATTGATGGAGGGGAG---TCG 34658899 Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 || || ||| | || |||||||||| |||||||| || || || ||||| ||| ||| Sbjct 34658900 TTTGCGGAGAGGATTATTGCGTTTGCTTGTGTGGAAGGGATTTTTTTCTCGGGGAGCTTC 34658959 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 ||||| |||| |||| |||||||| |||| || ||||| || | ||||| ||||| Sbjct 34658960 TGCGCGATTTTTTGGCTGAAGAAGAGGGGGCTTATGCCCGGATTGACTTTCTCGAATGAG 34659019 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCA 65216 || ||||| | ||||||||||| || Sbjct 34659020 CTGATTTCGAGGGATGAGGGTCTGCA 34659045 Score = 113 bits (124), Expect = 5e-20 Identities = 245/364 (67%), Gaps = 2/364 (1%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || || ||||| || ||| || || || ||||| || ||| ||||| Sbjct 10901024 CCAGGAACTGGGAAAACCCTTCTAGCCAAGGCTATTGCTGGTGAGGCAGGTGTTCCATTT 10900965 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || | |||| || | ||||| || |||||||||||||| ||||| | || Sbjct 10900964 TTCTCGATTTCTGGTTCAGAGTTTGTTGAAATGTTTGTTGGTGTTGGTGCGTCTCGAGTG 10900905 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || || || || | | ||| |||||| || || ||||| || ||||||| ||| Sbjct 10900904 CGTGACCTTTTCAAGAAAGCCAAAGAAAATGCTCCCTGCATTGTATTTGTTGATGAAATT 10900845 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATG-CCAGCAAATGACGAGAGAGAACA 175553 ||||| || || | |||| | || ||||| || | || ||||| || |||||||| Sbjct 10900844 GATGCTGTTGGGAGGCAAAGAGGCACTGGT-ATAGGAGGAGGGAATGATGAAAGAGAACA 10900786 Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGT 175613 ||| | || || || || || || |||||||| ||||| | ||||| || | || Sbjct 10900785 GACACTGAACCAGCTTCTGACAGAAATGGATGGTTTTGAAGGAAACACTGGTGTTATTGT 10900726 Query 175614 TATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTT 175673 ||||| || || ||||| | || || || || ||||| | | || || || || Sbjct 10900725 AATTGCAGCAACAAATCGTGCTGACATTCTAGACTCTGCCCTATTAAGACCTGGCCGATT 10900666 Query 175674 TGAT 175677 |||| Sbjct 10900665 TGAT 10900662 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75933 AGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATC 75992 ||||| | || |||| ||||| ||||| |||| ||||||||||||| | || || | Sbjct 36376376 AGGATACCTGCAACAGAAAGAGCAACCAGCAGAACCTGGGAACAATCAAATGTTCCAACC 36376435 Query 75993 TTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCAT 76052 | || || || ||| | |||||||| | ||| || ||||| ||||||||||||| Sbjct 36376436 TGTGTACTGAGATTATTGAGTACACTAGTCCATCTGAAACTGCTGTATGCAATTTGGCAT 36376495 Query 76053 CAATCGCCCTTCC 76065 |||| ||||| || Sbjct 36376496 CAATTGCCCTCCC 36376508 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75933 AGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATC 75992 ||||| | || |||| ||||| ||||| |||| ||||||||||||| | || || | Sbjct 36405600 AGGATACCTGCAACAGAAAGAGCAACCAGCAGAACCTGGGAACAATCAAATGTTCCAACC 36405659 Query 75993 TTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCAT 76052 | || || || ||| | |||||||| | ||| || ||||||||||||||||||| Sbjct 36405660 TGTGTACTGAGATTATTGAGTACACGAGTCCATCTGAAACTGCTGTTTGCAATTTGGCAT 36405719 Query 76053 CAATCGCCCTTCC 76065 |||| || || || Sbjct 36405720 CAATTGCACTCCC 36405732 >seq1 Length=51465339 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 9/203 (4%) Strand=Plus/Minus Query 65011 CCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAA---AGTCTCGC 65067 || ||| | |||| ||||||||| ||||| ||| ||| |||| | ||| | Sbjct 39365911 CCGTGTGTCGAGAGGAAGGCGAATTGGGCGCTGAGGTGGATTGATGGAGGGGAGTGT--- 39365855 Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 ||||| ||| | || | |||||||| |||||||| || || || ||||| ||| Sbjct 39365854 ---TTCGCGGAGAGGATTGTGGCGTTTGCTTGTGTGGAAGGGATTTTTTTCTCGGGGAGT 39365798 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 || ||||| | | ||||||||||||| | || || ||||| || | || ||| ||| Sbjct 39365797 TTTTGCGCGGTGTTTTGGTTGAAGAAGAGAGGGCTGATGCCTGGATTGACCTACTCGAAT 39365738 Query 65188 GAACTTATTTCCCGAGATGAGGG 65210 || || ||||| ||||||||||| Sbjct 39365737 GAGCTGATTTCGCGAGATGAGGG 39365715 >seq5 Length=41956025 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/199 (72%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 |||||||| |||| |||||||| ||||| || ||| | ||| | ||||| | ||| Sbjct 7451037 TTTGTGGAATTGTTCGTTGGTGTTGGTGCGTCGAGAGTTAGGGATTTGTTTGAGAAGGCC 7450978 Query 175456 C--GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAAC 175513 |||||| || || ||||| || ||||||||||||||||| ||||| | ||| Sbjct 7450977 AAGGCGAAAGCG--CCTTGCATTGTGTTTATTGATGAGATTGATGCTGTGGGGAGACAAA 7450920 Query 175514 GCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACT 175571 | | ||||| ||| | | | |||||| ||| | || || || |||||||| || | Sbjct 7450919 GAGGAGCTGGAATGGGAGG--TGGAAATGATGAGCGGGAGCAGACTATTAATCAGCTGTT 7450862 Query 175572 CACCGAGATGGATGGCTTT 175590 ||||| |||||||| ||| Sbjct 7450861 GACCGAAATGGATGGGTTT 7450843 >seq4 Length=35924511 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 |||||||| ||||||||||||| |||||| ||| || | ||| | ||||| | || Sbjct 26465496 TTTGTGGAATTGTTTGTTGGTGTTGGTGCCTCAAGAGTGAGGGATTTGTTTGAGAAGGCA 26465437 Query 175456 C--GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAAC 175513 |||||| || || ||||| || ||||||||||||||||| ||||| | ||| Sbjct 26465436 AAGGCGAAAGCT--CCTTGCATTGTGTTTATTGATGAGATTGATGCTGTGGGGAGGCAGA 26465379 Query 175514 GCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACT 175571 | | || || ||| | | | |||||| |||||||| || || ||||| || || | Sbjct 26465378 GAGGAGCAGGAATGGGAGG--TGGAAATGATGAGAGAGAGCAGACTATTAACCAGCTGTT 26465321 Query 175572 CACCGAGATGGATGGCTT 175589 || |||||||| || || Sbjct 26465320 GACAGAGATGGACGGGTT 26465303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596533611938880