Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq4825 536 1e-147 seq6 345 5e-90 seq8 300 2e-76 seq36 132 6e-26 seq4 87.8 2e-12 seq1 82.4 9e-11 >seq4825 Length=155848 Score = 536 bits (594), Expect = 1e-147 Identities = 711/984 (72%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| ||| |||||||||| |||||||| || ||||| | ||| ||||||||||||||| Sbjct 286 TCAACAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCGTGCATAACTTCCATA 345 Query 7942 CCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCA 8001 || | ||| || | ||| | | ||| |||| ||| ||| | || | | |||| Sbjct 346 CCAAGGTTAGCGCGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCA 405 Query 8002 ACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATA 8061 || || |||||||| || || || || || ||||| || ||||| |||| ||||| | | Sbjct 406 ACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAA 465 Query 8062 GAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTG 8121 | ||| ||||| | || ||| || || | | ||| ||||||||||| | | | | | Sbjct 466 GCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAG 525 Query 8122 TTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAAT 8180 ||||| |||| | ||||| ||||||||||||| ||||| || |||||||| || || || Sbjct 526 TTGTTGAAACTA-GCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGAT 584 Query 8181 ATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGT 8240 |||||| || ||||||||||| || ||| | ||||| | || ||| || | ||| || Sbjct 585 ATTATAAGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGT 644 Query 8241 TGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCC 8300 || || ||||| | | ||| || || |||||||| ||||||||||| || || || || Sbjct 645 GGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAACC 704 Query 8301 ACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGC 8360 ||||| | ||| ||||| ||| ||| || || || |||||||| ||||| ||||| || Sbjct 705 GCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGC 764 Query 8361 TTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAA 8420 |||||||| | ||||||||| || |||||||| || ||||||||||| |||||||| || Sbjct 765 CTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 824 Query 8421 TGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACT 8480 || ||||| | ||| || | ||||| || || |||||| | || ||||| Sbjct 825 GCTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGA 884 Query 8481 ATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACC 8540 |||||| ||| ||||| |||| |||||||| ||| | | |||||||| | ||| Sbjct 885 ATATGCAACAGCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCTCCCACTCACGACC 944 Query 8541 CATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTT 8600 ||||||| || | |||| | ||||| | | | || | ||| ||||| ||||| Sbjct 945 CATGTAACAAGCTACACCAAGTAAAAAGTGTAGAACGATTAATTCATAAGGACCACCGTT 1004 Query 8601 ATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGC 8660 || ||||| ||||| | | || |||||||| || ||||| ||||| || || ||||| Sbjct 1005 GTATAACCATTCATCAACAGAAGCCGCTTCCCAGATTGGATAAAAGTGCAAACCTATAGC 1064 Query 8661 GTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGC 8720 |||| |||| | ||||| || || || ||||| ||||| | | || || | Sbjct 1065 TGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCCATAAAGTAGAGATCCAGA 1124 Query 8721 AACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAA 8780 |||||||||||||||||| || ||||| || || ||||||||||| || || | ||||| Sbjct 1125 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAA 1184 Query 8781 GCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAG 8840 || || || | || || ||| ||||| | ||| |||||||| || | ||||| Sbjct 1185 TACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1244 Query 8841 TCTGTTGTTTGTACTTGTAACCCA 8864 | ||| | || || || | ||| Sbjct 1245 ACGGTTTTCGGTGCTGGTTATCCA 1268 >seq6 Length=36610139 Score = 345 bits (382), Expect = 5e-90 Identities = 445/610 (73%), Gaps = 3/610 (0%) Strand=Plus/Minus Query 7933 ACTTCCATACCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCA 7992 || |||||||| | ||| || | ||| | | ||| |||| ||| ||| | || Sbjct 34153092 ACCTCCATACCAAGGTTAGCGCGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCT 34153033 Query 7993 TTAACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAA 8052 | | |||||| || |||||||| || || || || || ||||| || ||||| |||| Sbjct 34153032 TGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTG 34152973 Query 8053 ATACCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGA 8112 ||||| | || ||| ||||| | || ||| || || | | ||| ||||||||||| | | Sbjct 34152972 ATACCTAAAGCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAA 34152913 Query 8113 CTTCTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCT-ACCAAAGTATCCATGAG 8170 | | |||||| |||| | ||||| ||||||||||||| |||||| || ||||||| Sbjct 34152912 GAACGAGAGTTGTTGAAACTA-GCATATTGGAAGATTAATCGGACCAAAATAACCATGAG 34152854 Query 8171 CAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACT 8230 | || || |||||||| || ||||||||||| || ||| | ||||| | || ||| | Sbjct 34152853 CGGCTACGATATTATAAGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATT 34152794 Query 8231 CTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGA 8290 | | ||| || || || ||||| | | ||| || || |||||||| ||||||||||| | Sbjct 34152793 CATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAA 34152734 Query 8291 AGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGT 8350 | || || || ||||| | ||| ||||| ||| ||| || || || |||||||| |||| Sbjct 34152733 ATAGGGAACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGT 34152674 Query 8351 TATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTC 8410 | ||||| || |||||||| | ||||||||| || |||||||| || ||||||||||| | Sbjct 34152673 TGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATAC 34152614 Query 8411 CATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATA 8470 ||||||| || || ||||| | ||| || | ||||| || || |||||| | | Sbjct 34152613 CATCAGAAAAGCTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAA 34152554 Query 8471 CTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCC 8530 | ||||| |||||| ||| ||||| |||| |||||||| ||| | | ||||| Sbjct 34152553 CAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCTCCC 34152494 Query 8531 ACTGTCTACC 8540 || ||| || Sbjct 34152493 TCTCTCTCCC 34152484 >seq8 Length=31745509 Score = 300 bits (332), Expect = 2e-76 Identities = 341/455 (75%), Gaps = 2/455 (0%) Strand=Plus/Minus Query 8094 AGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAACGATGCATACTGGAAGATTAATC 8152 ||| ||||||||||| | | | | |||||| |||| | ||||| ||||||||||||| Sbjct 5169165 AGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTA-GCATATTGGAAGATTAATC 5169107 Query 8153 TACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTAT 8212 ||||| || |||||||| || || |||||||| || ||||||||||| || ||| | | Sbjct 5169106 GGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGCCCGAACCTGT 5169047 Query 8213 AACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAG 8272 |||| | || ||| || | ||| || || || ||||| | | ||| || || |||| Sbjct 5169046 AACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAG 5168987 Query 8273 AACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGA 8332 |||| ||||||||||| || || || || ||||| | ||| ||||| ||| ||| || | Sbjct 5168986 AACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACGCCTAACATGTGAA 5168927 Query 8333 AAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAG 8392 | || |||||||| ||||| ||||| || |||||||| | ||||||||| || ||||||| Sbjct 5168926 ATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAG 5168867 Query 8393 AAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACA 8452 | || ||||||||||| |||||||| || || ||||| | ||| || | ||||| | Sbjct 5168866 AGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCGATTGGGTAGATCAAGAAAA 5168807 Query 8453 CTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTA 8512 | || |||||| | || ||||| |||||| ||| ||||| |||| |||||||| Sbjct 5168806 CAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCTA 5168747 Query 8513 AGCGGTATGATAACTCCCACTGTCTACCCATGTAA 8547 ||| | | |||||||| | |||||||||| Sbjct 5168746 GACGGAAACTAAGCTCCCACTCACGACCCATGTAA 5168712 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 8644 AAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCA 8703 ||||| || || ||||| |||| |||| | ||||| || || || ||||| ||| Sbjct 2878914 AAGTGCAAACCTATAGCTGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCCA 2878855 Query 8704 TACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCA 8763 || | | || || | |||||||||||||||||| || ||||| || || ||||||||| Sbjct 2878854 TAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCA 2878795 Query 8764 ATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCA 8823 || || || | ||||| || || || | || || ||| ||||| | ||| ||| Sbjct 2878794 ATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCA 2878735 Query 8824 AACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 ||||| || | ||||| | ||| | || || || | ||| Sbjct 2878734 AACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCA 2878694 >seq36 Length=917149 Score = 132 bits (146), Expect = 6e-26 Identities = 186/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 8586 ATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAA 8645 ||| ||||| ||||| || ||||| ||||| | | || |||||||| || ||||| || Sbjct 329710 ATAAGGACCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCAGATTGGATAAAA 329769 Query 8646 GTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATA 8705 ||| || || ||||| |||| |||| | ||||| || || || ||||| ||||| Sbjct 329770 GTGCAAACCTATAGCTGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCCATA 329829 Query 8706 CATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAAT 8765 | | || |||| |||||||||||||||||| || ||||| || || ||| ||||| Sbjct 329830 AAGTAGAGATCCTGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAATGGCAAT 329889 Query 8766 AAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAA 8825 || || | ||||| || || || | || || ||| ||||| | ||| ||||| Sbjct 329890 GAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAA 329949 Query 8826 CCAACCGACATAAAGTCTGTT 8846 ||| || | ||||| | ||| Sbjct 329950 CCATCCAATGTAAAGACGGTT 329970 >seq4 Length=35924511 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 7876 GAAGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACT 7935 |||| ||| ||| |||||||||| | |||||| || ||||| ||| |||||||| Sbjct 4757481 GAAGCTTCAACAGCAGCTAAGTCTAGAGAGAAGTTATGAGCATTATGTTCGAGCATAACT 4757422 Query 7936 TCCATACCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995 || |||| | || || | ||| | | ||| | || ||| ||| | | | | Sbjct 4757421 TCTTTACCAAGATTAGCGCGGTTAATGATATCAGCTCAAGTATTAATTACACAGGCTTGA 4757362 Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055 |||||| || |||||||| || || || | || ||||| || | ||| |||| ||| Sbjct 4757361 CTATCAACTACAGATTGGTTGAAATTGAAATCATTTAGGTTGAAAGTCATAGTGCTGATA 4757302 Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTG 8108 || | || ||| ||||| | || || || || | | ||| ||||||||||| Sbjct 4757301 CCTAAAGCAGTAAACCAGATACTTATTACAGGCCAAGCAGCTAGGAAGAAGTG 4757249 >seq1 Length=51465339 Score = 82.4 bits (90), Expect = 9e-11 Identities = 153/222 (69%), Gaps = 21/222 (9%) Strand=Plus/Minus Query 7998 ATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACC 8057 |||||| || |||||||| || | || || || || || || ||||| |||| ||||| Sbjct 27733359 ATCAACTACAGATTGGTTGAAACTGAAACCATTTAGATTGAAAGCCATAGTGCTGATACC 27733300 Query 8058 CATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTG--AAGACTT 8115 ||| || || || |||||||| ||||||||||| |||| | Sbjct 27733299 TT---AAGCTAGTAAACCAGATACAACT------------AGGAAGAAGTGTAAAGAATG 27733255 Query 8116 CTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGC 8174 | |||||| |||| | ||| | ||||| ||||||| ||||| || ||||||| | Sbjct 27733254 AGA--GTTGTTGAAACTA-GCAGATTGGAATATTAATCGACCAATATAACCATGAGTGGG 27733198 Query 8175 AACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACC 8216 || |||||| | | ||||||||||| || ||| | ||||| Sbjct 27733197 TACGATATTACAAGCTTCTTCTTCTTGCCCGAACCTGTAACC 27733156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615825248100720