Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq4825 488 2e-133 seq6 342 1e-89 seq8 266 9e-67 seq36 120 9e-23 >seq4825 Length=155848 Score = 488 bits (540), Expect = 2e-133 Identities = 681/952 (72%), Gaps = 2/952 (0%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | |||||||| || || | ||||| || | | | ||| |||| || Sbjct 1250 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACTTTATTGACCGCAAC 1192 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || |||||||||||||| ||| || || || || || || ||||| || || || Sbjct 1191 TTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1132 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 ||| || |||| || || | ||||| ||||| || || || || ||| | |||||| Sbjct 1131 ACCTGTTTCTGGATCTCTACTTTATGGCAACAATATTATTTCCGGTGCCATTATTCCGAC 1072 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 | || || || | ||||| || ||||| |||||||| ||| | |||||||||| Sbjct 1071 TTCTGCAGCTATAGGTTTGCACTTTTATCCAATCTGGGAAGCGGCTTCTGTTGATGAATG 1012 Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559 | | |||||||| ||||| | || | | ||| | ||||| | |||| || | Sbjct 1011 GTTATACAACGGTGGTCCTTATGAATTAATCGTTCTACACTTTTTACTTGGTGTAGCTTG 952 Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||||||||| || |||||||| ||||| | || ||||| ||| | || ||||| ||| Sbjct 951 TTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGT 892 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679 ||| || || |||||||| || ||||| |||||||| ||| | | || || | || || Sbjct 891 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCA 832 Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739 || |||||||||| |||||| | || || || || || ||||||| |||| | || Sbjct 831 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 772 Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGT 41799 ||||||||||||||||| || |||||||| || ||||||||| | || || || || || Sbjct 771 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 712 Query 41800 ATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCG 41859 ||| || || | || ||||||||| ||| |||| || || | || | Sbjct 711 ATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAG 652 Query 41860 TGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGAC 41919 || || || ||| | | || || | ||||||| ||| || ||||| ||||| || Sbjct 651 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAAC 592 Query 41920 TTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTT 41979 ||| ||||| || || ||||| || |||||||| || | ||||||||||||||||| || Sbjct 591 TTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTT 532 Query 41980 TAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039 || || || ||| | | || ||||| || ||||| |||||||| |||||||| ||||| Sbjct 531 CAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 472 Query 42040 TGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATC 42099 | |||| | || | || |||||||||||| | ||||||||||| || |||||||| Sbjct 471 TACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 412 Query 42100 TCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAA 42159 | | | | | | | || | || || || || |||||||| || ||||||| || || Sbjct 411 TGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGCGCTAA 352 Query 42160 CCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGAC 42211 |||||| | || || ||||| || || || || || |||||||| || ||| Sbjct 351 CCTTGGTATGGAAGTTATGCACGAACGTAATGCTCATAACTTCCCTCTAGAC 300 >seq6 Length=36610139 Score = 342 bits (378), Expect = 1e-89 Identities = 444/611 (73%), Gaps = 2/611 (0%) Strand=Plus/Plus Query 41566 GGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTA 41625 |||| ||||| |||| ||||| | || ||||| ||| | || ||||| |||||| || Sbjct 34152484 GGGA-GAGAGAGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATA 34152542 Query 41626 CTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTC 41685 || |||||||| || ||||| |||||||| ||| | | || || | || || || Sbjct 34152543 TTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAG 34152602 Query 41686 TTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCA 41745 |||||||||| |||||| | || || || || || ||||||| |||| | || ||||| Sbjct 34152603 CTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCA 34152662 Query 41746 GGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGG 41805 |||||||||||| || |||||||| || ||||||||| | || || || || ||||| || Sbjct 34152663 GGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGG 34152722 Query 41806 TGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGAC 41865 || | || ||||||||| ||| |||| || || | || | || || Sbjct 34152723 CGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAAC 34152782 Query 41866 GACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAA 41925 || ||| | | || || | ||||||| ||| || ||||| ||||| ||||| || Sbjct 34152783 CACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAA 34152842 Query 41926 TATTGTTGCTGCTCACGGCTATTTTGGTCGGCTT-ATCTTCCAATATGCTAGCTTTAATA 41984 ||| || || ||||| || |||||||||| | || ||||||||||||||||| || || | Sbjct 34152843 TATCGTAGCCGCTCATGGTTATTTTGGTCCGATTAATCTTCCAATATGCTAGTTTCAACA 34152902 Query 41985 ATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTG 42044 | || ||| | | || ||||| || ||||| |||||||| |||||||| |||||| ||| Sbjct 34152903 ACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTG 34152962 Query 42045 CGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGC 42104 | | || | || |||||||||||| | ||||||||||| || ||||||||| | Sbjct 34152963 CTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAG 34153022 Query 42105 TAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTG 42164 | | | | | || | || || || || |||||||| || ||||||| || ||||||| Sbjct 34153023 TTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGCGCTAACCTTG 34153082 Query 42165 GCTTTGAGGTG 42175 | | |||||| Sbjct 34153083 GTATGGAGGTG 34153093 >seq8 Length=31745509 Score = 266 bits (294), Expect = 9e-67 Identities = 338/465 (73%), Gaps = 0/465 (0%) Strand=Plus/Plus Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||||||||| || |||||||| ||||| | || ||||| ||| | || ||||| ||| Sbjct 5168712 TTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGT 5168771 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679 ||| || || |||||||| || ||||| |||||||| ||| | | || || | || || Sbjct 5168772 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCA 5168831 Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739 || |||||||||| |||||| | || || || || || ||||||| |||| | || Sbjct 5168832 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 5168891 Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGT 41799 ||||||||||||||||| || |||||||| || ||||||||| | || || || || || Sbjct 5168892 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 5168951 Query 41800 ATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCG 41859 ||| || || | || ||||||||| ||| |||| || || | || | Sbjct 5168952 ATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAG 5169011 Query 41860 TGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGAC 41919 || || || ||| | | || || | ||||||| ||| || ||||| ||||| || Sbjct 5169012 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAAC 5169071 Query 41920 TTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTT 41979 ||| ||||| || || ||||| || |||||||| || | ||||||||||||||||| || Sbjct 5169072 TTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTT 5169131 Query 41980 TAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGT 42024 || || || ||| | | || ||||| || ||||| |||||||| Sbjct 5169132 CAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGT 5169176 Score = 86.0 bits (94), Expect = 2e-12 Identities = 128/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | |||||||| || || | ||||| || | | | ||| |||| || Sbjct 2878712 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACTTTATTGACCGCAAC 2878770 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || |||||||||||||| ||| || || || || || || ||||| || || || Sbjct 2878771 TTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 2878830 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGA 41438 ||| || |||| || || | ||||| ||||| || || || || ||| | |||||| Sbjct 2878831 ACCTGTTTCTGGATCTCTACTTTATGGCAACAATATTATTTCCGGTGCCATTATTCCGA 2878889 >seq36 Length=917149 Score = 120 bits (132), Expect = 9e-23 Identities = 183/258 (71%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | |||||||| || || | ||||| || | | | ||| |||| || Sbjct 329970 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACTTTATTGACCGCAAC 329912 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || |||||||||||||| ||| | || || || || || ||||| || || || Sbjct 329911 TTCTGTATTTATTATCGCCTTCATTGCCATTCCTCCAGTAGATATTGATGGTATTCGTGA 329852 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 ||| || | || || || | ||||| ||||| || || || || ||| | |||||| Sbjct 329851 ACCTGTTTCAGGATCTCTACTTTATGGCAACAATATTATTTCCGGTGCCATTATTCCGAC 329792 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 | || || || | ||||| || ||||| |||||||| ||| | |||||||||| Sbjct 329791 TTCTGCAGCTATAGGTTTGCACTTTTATCCAATCTGGGAAGCGGCTTCTGTTGATGAATG 329732 Query 41500 GCTGTACAACGGCGGTCC 41517 | | |||||||| ||||| Sbjct 329731 GTTATACAACGGTGGTCC 329714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146206020635504