Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq4825 545 7e-151 seq6 347 3e-91 seq8 269 8e-68 seq36 147 6e-31 >seq4825 Length=155848 Score = 545 bits (604), Expect = 7e-151 Identities = 717/988 (73%), Gaps = 4/988 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || || | ||||||||||| |||| |||||| Sbjct 1286 TGGGGTCGCTTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTT 1227 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| || | | | | || || | ||| |||||| |||| ||||| Sbjct 1226 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCAT 1168 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||| || || Sbjct 1167 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 1108 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||||||||| || || || |||||| | | || | | || || || | || || Sbjct 1107 TGGCAACAATATTATTTCCGGTGCCATTATTCCGACTTCTGCAGCTATAGGTTTGCACTT 1048 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 ||| | ||||||||||| | | |||| |||||| | ||||| || || |||||| | Sbjct 1047 TTATCCAATCTGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGTCCTTATGA 988 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 | |||| | ||||| | | ||| | | |||| |||| || || ||||| || Sbjct 987 ATTAATCGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCT 928 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | ||| || || ||| | || ||||| |||||| || || || ||||| || || Sbjct 927 TAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 868 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || ||||| || ||| | |||| ||| | || ||||| ||||| ||||| ||||| Sbjct 867 TGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCC 808 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || || || ||||| |||||||||||| | || ||||||||||| || ||||| || Sbjct 807 TCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCT 748 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || || || ||| | || || || || ||||| || || || | || || Sbjct 747 TATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGC 688 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | | || |||||| | | | | ||||| || ||||| ||| Sbjct 687 TATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 628 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 ||| | || |||| |||||| ||||| || || |||||||| || || || || ||||| Sbjct 627 TAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGG 568 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057 ||| ||||| || | |||||||||||||| | |||| || || ||| ||||| |||| Sbjct 567 TTATTTTGGCCGATTAATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCTTTACACT 509 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 |||| || || |||||||| || || || || ||||| ||| || | || |||| |||| Sbjct 508 TCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACTA 449 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177 |||| || ||| | |||||||| || || |||||||| | ||||||| ||| | || Sbjct 448 TGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTG 389 Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237 | || ||||||||||||||| | || || || |||||||| | || || ||||||| Sbjct 388 TAATTAATACTTGGGCTGATATCATTAACCGCGCTAACCTTGGTATGGAAGTTATGCACG 329 Query 43238 AGCGGAATGCACATAACTTCCCGCTTGA 43265 | || ||||| ||||||||||| || || Sbjct 328 AACGTAATGCTCATAACTTCCCTCTAGA 301 >seq6 Length=36610139 Score = 347 bits (384), Expect = 3e-91 Identities = 440/601 (73%), Gaps = 3/601 (0%) Strand=Plus/Plus Query 42632 GGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTG 42691 |||| ||| | ||| || || ||| | || ||||| |||||| || || || |||| Sbjct 34152494 GGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTG 34152553 Query 42692 TGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATG 42751 | || || || ||||| || ||| | |||| ||| | || ||||| ||||| |||| Sbjct 34152554 TTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATG 34152613 Query 42752 GAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATA 42811 | |||||||| || || || ||||| |||||||||||| | || ||||||||||| || | Sbjct 34152614 GTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACA 34152673 Query 42812 ACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGT 42871 |||| |||||||| || || || ||| | || || || || ||||| || || || | | Sbjct 34152674 ACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTAT 34152733 Query 42872 TCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACG 42931 | |||||||||||| | | || |||||| | | | | ||||| || ||||| | Sbjct 34152734 TTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATG 34152793 Query 42932 AAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAG 42991 || ||| | || |||| |||||| ||||| || || |||||||| || || || | Sbjct 34152794 AATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAATATCGTAGCCG 34152853 Query 42992 CGCATGGTTACTTTGGACGGCTT-ATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTC 43049 | |||||||| ||||| | | || |||||||||||||| | |||| || || ||| || Sbjct 34152854 CTCATGGTTATTTTGGTCCGATTAATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTC 34152912 Query 43050 TTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGT 43109 ||| |||||||| || || |||||||| || || || || ||||| ||| || | || | Sbjct 34152913 TTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTAT 34152972 Query 43110 CAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCA 43169 ||| |||||||| || ||| | |||||||| || || |||||||| | ||||||| ||| Sbjct 34152973 CAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCA 34153032 Query 43170 GAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGT 43229 | ||| || ||||||||||||||| | || || || |||||||| | ||||| Sbjct 34153033 AGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGCGCTAACCTTGGTATGGAGGT 34153092 Query 43230 G 43230 | Sbjct 34153093 G 34153093 >seq8 Length=31745509 Score = 269 bits (298), Expect = 8e-68 Identities = 341/466 (73%), Gaps = 2/466 (0%) Strand=Plus/Plus Query 42615 TTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGT 42674 |||| |||| || || ||||| ||| | ||| || || ||| | || ||||| ||| Sbjct 5168712 TTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGT 5168771 Query 42675 TGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCA 42734 ||| || || || ||||| || || || ||||| || ||| | |||| ||| | || || Sbjct 5168772 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCA 5168831 Query 42735 AGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGT 42794 ||| ||||| ||||| |||||||| || || || ||||| |||||||||||| | || Sbjct 5168832 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 5168891 Query 42795 CTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGT 42854 ||||||||||| || ||||| |||||||| || || || ||| | || || || || || Sbjct 5168892 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 5168951 Query 42855 ATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCG 42914 ||| || || || | || |||||||||||| | | || |||||| | | | | Sbjct 5168952 ATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAG 5169011 Query 42915 TGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGAC 42974 ||||| || ||||| ||| ||| | || |||| |||||| ||||| || || || Sbjct 5169012 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAAC 5169071 Query 42975 TTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTT 43034 |||||| || || || || |||||||| ||||| || | |||||||||||||| | ||| Sbjct 5169072 TTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGC-TAGTT 5169130 Query 43035 T-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGT 43079 | || || ||| ||||| |||||||| || || |||||||| || Sbjct 5169131 TCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGT 5169176 Score = 150 bits (166), Expect = 5e-32 Identities = 158/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || || | ||||||||||| |||| |||||| Sbjct 2878676 TGGGGTCGCTTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTT 2878735 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| || | | | | || || | ||| |||||| |||| ||||| Sbjct 2878736 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCAT 2878794 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||| || || Sbjct 2878795 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 2878854 Query 42459 TGGCAACAACATCATCTCTGGTGCC 42483 ||||||||| || || || |||||| Sbjct 2878855 TGGCAACAATATTATTTCCGGTGCC 2878879 >seq36 Length=917149 Score = 147 bits (162), Expect = 6e-31 Identities = 213/298 (71%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||| | | || || | ||||||||||| |||| |||||| Sbjct 330006 TGGGGTCGCTTCTGTAACTAGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTT 329947 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| || | | | | || || | ||| |||||| |||| ||||| Sbjct 329946 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCAT 329888 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 ||| ||||| ||||| |||||||| |||||||||||||| || || ||||| || || Sbjct 329887 TGCCATTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCAGGATCTCTACTTTA 329828 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||||||||| || || || |||||| | | || | | || || || | || || Sbjct 329827 TGGCAACAATATTATTTCCGGTGCCATTATTCCGACTTCTGCAGCTATAGGTTTGCACTT 329768 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTAT 42576 ||| | ||||||||||| | | |||| |||||| | ||||| || || |||||| Sbjct 329767 TTATCCAATCTGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGTCCTTAT 329710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143524574314648