Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq4825 477 3e-130 seq6 315 2e-81 seq8 237 5e-58 seq4 132 1e-26 seq36 104 7e-18 >seq4825 Length=155848 Score = 477 bits (528), Expect = 3e-130 Identities = 700/985 (71%), Gaps = 4/985 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||||||| || || ||||||||||||||||| |||||||||||||| | || |||||| Sbjct 295 GCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCGTGCATAACTTCCATACCAAGGTTA 354 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 355 GCGCGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACAGAT 414 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| || ||||| |||| |||||| | || || | | Sbjct 415 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAAC 474 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| || ||||| || | |||||| ||| || ||| Sbjct 475 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAA 534 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || ||||||| ||||| || || || || || || |||||||| || Sbjct 535 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 594 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| |||||||| ||| | || || | ||| || | | ||||| ||||| Sbjct 595 TCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 654 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | || || |||||| || ||||||||| || || | || ||||| || Sbjct 655 ATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACA 714 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| || || ||| || ||||||||||| || || || || || || |||||||| Sbjct 715 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 774 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||| ||||| |||||||||||||| || |||||||| |||||| ||| || ||||| Sbjct 775 ATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGA 834 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 |||| || || | ||||| || || ||| || | | || |||| |||||||||| Sbjct 835 CCGATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 894 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| |||| ||| ||||| | | || || ||||||| | || || Sbjct 895 GCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCTCCCACTCACGACCCATGTAACAA 954 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||| ||||| | | || | || ||| || || || ||||||| ||| Sbjct 955 GCTACACCAAGTAAAAAGTGTAGAACGATTAATTCATAAGGACCACCGTTGTATAACCAT 1014 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 || || | | | ||||||||||| || ||||| || | || || || ||| | Sbjct 1015 TCATCAACAGAAGCCGCTTCCCAGATTGGATAAAAGTGCAAACCTATAGCTGCAGAAGTC 1074 Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716 || | | || || || || |||||||| || || | || || || ||||| || ||| Sbjct 1075 GGAATAATGGCACCGGAAATAATATTGTTGCCATAAAGTAGAGATCCAGAAACAGGTTCA 1134 Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGT 26775 || || ||||| |||||||| || || || || |||||||| | ||||| ||| | ||| Sbjct 1135 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACA-GAAGT 1193 Query 26776 GGCTG-CGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 || | | | ||| |||| ||||| | || || |||||||| | || |||||||| | Sbjct 1194 TGCGGTCAATAAAGTAGGG-ATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTT 1252 Query 26835 CAGTACTTGTAACCCACTCACAAAA 26859 | || || || | ||| | ||| || Sbjct 1253 CGGTGCTGGTTATCCAGTTACAGAA 1277 >seq6 Length=36610139 Score = 315 bits (348), Expect = 2e-81 Identities = 431/601 (72%), Gaps = 1/601 (0%) Strand=Plus/Minus Query 25928 CCGAGGTTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCT 25987 || |||||||| ||||| | | ||||||||| ||| |||| || | | ||| Sbjct 34153083 CCAAGGTTAGCGCGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCA 34153024 Query 25988 ACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATA 26047 ||||| || ||||| || || |||||||||||||| || ||||| |||| |||||| | | Sbjct 34153023 ACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAA 34152964 Query 26048 GATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTG 26107 | || | ||| || || || || ||||||| ||| || ||||| || | |||||| | Sbjct 34152963 GCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAG 34152904 Query 26108 TTATTAAAACTCGCATACTGAAAAATTAATCTC-CCAAAGTACCCGTGTGCAGCGACAAT 26166 || || ||||| ||||| || || ||||||| ||||| || || || || || || || Sbjct 34152903 TTGTTGAAACTAGCATATTGGAAGATTAATCGGACCAAAATAACCATGAGCGGCTACGAT 34152844 Query 26167 ATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGT 26226 |||||| || ||||| |||||||| ||| | || || | ||| || | | ||||| Sbjct 34152843 ATTATAAGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGT 34152784 Query 26227 CGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCC 26286 ||||| || | || || |||||| || ||||||||| || || | || Sbjct 34152783 GGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAACC 34152724 Query 26287 ACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGC 26346 ||||| || ||||| || || ||| || ||||||||||| || || || || || || Sbjct 34152723 GCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGC 34152664 Query 26347 TTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAA 26406 |||||||| | ||| ||||| |||||||||||||| || |||||||| |||||| ||| Sbjct 34152663 CTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 34152604 Query 26407 ACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGT 26466 || ||||| |||| || || | ||||| || || ||| || | | || |||| Sbjct 34152603 GCTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGA 34152544 Query 26467 ATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCC 26526 |||||||||| ||||| |||| ||| ||||| | | || || |||| || |||||| Sbjct 34152543 ATATGCAACAGCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCTCCCTCTCTCTCCC 34152484 Query 26527 T 26527 | Sbjct 34152483 T 34152483 >seq8 Length=31745509 Score = 237 bits (262), Expect = 5e-58 Identities = 323/451 (72%), Gaps = 0/451 (0%) Strand=Plus/Minus Query 26069 ACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGA 26128 || ||||||| ||| || ||||| || | |||||| ||| || ||||| ||||| || Sbjct 5169176 ACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 5169117 Query 26129 AAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGC 26188 || ||||||| ||||| || || || || || || |||||||| || ||||| |||||| Sbjct 5169116 AAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGC 5169057 Query 26189 CCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAA 26248 || ||| | || || | ||| || | | ||||| ||||| || | || Sbjct 5169056 CCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 5168997 Query 26249 GTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCA 26308 || |||||| || ||||||||| || || | || ||||| || ||||| || || Sbjct 5168996 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACGCCT 5168937 Query 26309 GCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTA 26368 ||| || ||||||||||| || || || || || || |||||||| | ||| ||||| Sbjct 5168936 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 5168877 Query 26369 AAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAA 26428 |||||||||||||| || |||||||| |||||| ||| || ||||| |||| || || Sbjct 5168876 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCGATTGGGTAG 5168817 Query 26429 ACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGT 26488 | ||||| || || ||| || | | || |||| |||||||||| ||||| ||| Sbjct 5168816 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGT 5168757 Query 26489 CTCATTCCTAGTCTGTAAGATAGTTCCCACT 26519 | ||| ||||| | | || || ||||||| Sbjct 5168756 CGCATACCTAGACGGAAACTAAGCTCCCACT 5168726 >seq4 Length=35924511 Score = 132 bits (146), Expect = 1e-26 Identities = 178/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||||||| || | ||||||||||||||| | ||| |||||||||| || || ||| Sbjct 4757466 GCTAAGTCTAGAGAGAAGTTATGAGCATTATGTTCGAGCATAACTTCTTTACCAAGATTA 4757407 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | |||||| || ||| |||| | | | ||| ||||| || Sbjct 4757406 GCGCGGTTAATGATATCAGCTCAAGTATTAATTACACAGGCTTGACTATCAACTACAGAT 4757347 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || ||| |||||||||| || | ||| |||| |||||| | || || | | Sbjct 4757346 TGGTTGAAATTGAAATCATTTAGGTTGAAAGTCATAGTGCTGATACCTAAAGCAGTAAAC 4757287 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || | | || ||||||| ||| || ||||| || | |||||| ||| || ||| Sbjct 4757286 CAGATACTTATTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAA 4757227 Query 26117 CTCGCATA 26124 || ||||| Sbjct 4757226 CTAGCATA 4757219 >seq36 Length=917149 Score = 104 bits (114), Expect = 7e-18 Identities = 193/278 (69%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 26569 TTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTA 26628 || ||| || || || ||||||| ||| || || | | | ||||||||||| || || Sbjct 329707 TTCATAAGGACCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCAGATTGGATA 329766 Query 26629 AAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCC 26688 ||| || | || || || ||| | || | | || || || || |||||||| || Sbjct 329767 AAAGTGCAAACCTATAGCTGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCC 329826 Query 26689 GTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGC 26748 || | || || || ||||| || ||||| || ||||| |||||||| || || || Sbjct 329827 ATAAAGTAGAGATCCTGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAATGGC 329886 Query 26749 GATGAAGGCAAGTATAAA-ACATGTAGTGGCTG-CGAGTAAGCAGGGTATCATAAGCACC 26806 |||||||| | ||||| ||| | ||| || | | | ||| |||| ||||| | || Sbjct 329887 AATGAAGGCGATAATAAATACA-GAAGTTGCGGTCAATAAAGTAGGG-ATCATCAAAACA 329944 Query 26807 CCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGT 26844 || |||||||| | || |||||||| || || || || Sbjct 329945 CCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGT 329982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147703534809920