Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq4825 585 3e-162 seq6 376 3e-99 seq8 316 2e-81 seq36 149 7e-31 seq4 138 1e-27 >seq4825 Length=155848 Score = 585 bits (648), Expect = 3e-162 Identities = 713/971 (73%), Gaps = 6/971 (1%) Strand=Plus/Minus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 || ||||| | || | || ||||| |||||| | ||||||||| | | | || Sbjct 1253 GAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCA 1194 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 || | || ||| |||||||||||||||| ||||| ||||| ||||||||||||||| Sbjct 1193 ACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 1134 Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172 ||||| || |||| ||| || | ||||| ||||| || || || ||||| || | || Sbjct 1133 GAACCTGTTTCTGGATCTCTACTTTATGGCAACAATATTATTTCCGGTGCCATTATTCCG 1074 Query 155173 AGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAG 155232 | ||| || || ||| | ||||| ||||| || |||||||| || || ||||||| Sbjct 1073 ACTTCTGCAGCTATAGGTTTGCACTTTTATCCAATCTGGGAAGCGGCTTCTGTTGATGAA 1014 Query 155233 TGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACA 155292 ||||| ||||| |||||||||| || | | || | ||||| | | || | | Sbjct 1013 TGGTTATACAACGGTGGTCCTTATGAATTAATCGTTCTACACTTTTTACTTGGTGTAGCT 954 Query 155293 GCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGT 155352 ||| |||||| ||||||| ||| || |||||| || ||||| |||||||| | Sbjct 953 TGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCT 894 Query 155353 GTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGT 155412 |||||||| || || || || | ||||| ||||| ||| | | || || ||||| Sbjct 893 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGT 834 Query 155413 CAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTC 155472 ||||| || ||||||| |||||||| || |||||||||||||| |||| ||| | Sbjct 833 CAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATT 774 Query 155473 GTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGT 155532 || ||||| || || ||||| |||||||||||||| || |||||| | || ||||| ||| Sbjct 773 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGT 714 Query 155533 GTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATC 155592 || ||||| || || || || ||||||||| ||||| ||||| || ||| | ||| Sbjct 713 GTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATC 654 Query 155593 CGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAA 155652 | ||||| || || | || ||| || | ||||||| |||||| |||||||||||| Sbjct 653 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAA 594 Query 155653 ACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCC 155712 |||||||| || || || |||||||| || || || || | |||||||| ||||| Sbjct 593 ACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGT 534 Query 155713 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGG 155772 ||||||||||| | | | ||||||||||| ||||| |||||||| || | |||||| Sbjct 533 TTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGG 474 Query 155773 GCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 155832 |||||| | ||| | || ||||| |||||||| || |||||||| |||||||| Sbjct 473 TTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 414 Query 155833 TCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGC 155889 |||||||| || |||| || || || ||| ||||| || || |||||||| Sbjct 413 TCTGTAGTTGA---TAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGC 357 Query 155890 GCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTT 155949 ||| |||||||||||||| |||||||| ||||| ||||| ||||||||||| ||| | Sbjct 356 GCTAACCTTGGTATGGAAGTTATGCACGAACGTAATGCTCATAACTTCCCTCTAGACTTA 297 Query 155950 GCTGCTGCTGA 155960 ||||||| ||| Sbjct 296 GCTGCTGTTGA 286 >seq6 Length=36610139 Score = 376 bits (416), Expect = 3e-99 Identities = 448/605 (74%), Gaps = 7/605 (1%) Strand=Plus/Plus Query 155309 AGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 155368 || |||| ||| || |||||| || ||||| |||||||| ||||||||| || || | Sbjct 34152491 AGAGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTC 34152550 Query 155369 CAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTG 155428 | || | ||||| ||||| ||| | | || || |||||||||| || |||| Sbjct 34152551 CTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTG 34152610 Query 155429 ATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAAC 155488 ||| |||||||| || |||||||||||||| |||| ||| | || ||||| || || | Sbjct 34152611 ATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 34152670 Query 155489 ACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTC 155548 |||| |||||||||||||| || |||||| | || ||||| ||||| ||||| || || | Sbjct 34152671 ACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCC 34152730 Query 155549 TTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGC 155608 | || ||||||||| ||||| ||||| || ||| | ||| | ||||| || || Sbjct 34152731 TATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAA 34152790 Query 155609 AAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTG 155668 | || ||| || | ||||||| |||||| |||||||||||||||||||| || || | Sbjct 34152791 ATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAATATCGTAG 34152850 Query 155669 CTGCTCATGGATACTTCGGT-CGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGA 155727 | |||||||| || || ||| || | |||||||| ||||| ||||||||||| | Sbjct 34152851 CCGCTCATGGTTATTTTGGTCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGT 34152910 Query 155728 AGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGT 155787 | | ||||||||||| ||||| |||||||| || | |||||| |||||| | ||| Sbjct 34152911 TCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGT 34152970 Query 155788 GTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCT 155847 | || ||||| |||||||| || |||||||| |||||||| |||||||| || | Sbjct 34152971 ATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA---T 34153027 Query 155848 AGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATG 155904 ||| || || || ||| ||||| || || ||||||||||| ||||||||| Sbjct 34153028 AGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGCGCTAACCTTGGTATG 34153087 Query 155905 GAAGT 155909 || || Sbjct 34153088 GAGGT 34153092 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 155896 CTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 |||||||||||||| |||||||| ||||| ||||| ||||||||||| ||| | |||||| Sbjct 7295908 CTTGGTATGGAAGTTATGCACGAACGTAATGCTCATAACTTCCCTCTAGACTTAGCTGCT 7295967 Query 155956 GCTGA 155960 | ||| Sbjct 7295968 GTTGA 7295972 >seq8 Length=31745509 Score = 316 bits (350), Expect = 2e-81 Identities = 345/458 (75%), Gaps = 0/458 (0%) Strand=Plus/Plus Query 155302 GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 155361 |||||| ||||||| ||| || |||||| || ||||| |||||||| ||||||||| Sbjct 5168719 GGTCGTGAGTGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATAT 5168778 Query 155362 TCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCT 155421 || || || || | ||||| ||||| ||| | | || || |||||||||| Sbjct 5168779 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGC 5168838 Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481 || ||||||| |||||||| || |||||||||||||| |||| ||| | || ||||| Sbjct 5168839 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAG 5168898 Query 155482 GCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGT 155541 || || ||||| |||||||||||||| || |||||| | || ||||| ||||| ||||| Sbjct 5168899 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 5168958 Query 155542 GGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACT 155601 || || || || ||||||||| ||||| ||||| || ||| | ||| | ||||| Sbjct 5168959 GGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACC 5169018 Query 155602 ACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAAC 155661 || || | || ||| || | ||||||| |||||| |||||||||||||||||||| Sbjct 5169019 ACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAAT 5169078 Query 155662 ATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAAC 155721 || || || |||||||| || || || || | |||||||| ||||| ||||||||| Sbjct 5169079 ATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTCAACAAC 5169138 Query 155722 TCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGT 155759 || | | | ||||||||||| ||||| |||||||| Sbjct 5169139 TCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGT 5169176 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 || ||||| | || | || ||||| |||||| | ||||||||| | | | || Sbjct 2878709 GAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCA 2878768 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 || | || ||| |||||||||||||||| ||||| ||||| ||||||||||||||| Sbjct 2878769 ACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 2878828 Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172 ||||| || |||| ||| || | ||||| ||||| || || || ||||| || | || Sbjct 2878829 GAACCTGTTTCTGGATCTCTACTTTATGGCAACAATATTATTTCCGGTGCCATTATTCCG 2878888 Query 155173 AGTTCAAACGCAATTGGTCTCCACTT 155198 | ||| || || ||| | ||||| Sbjct 2878889 ACTTCTGCAGCTATAGGTTTGCACTT 2878914 >seq36 Length=917149 Score = 149 bits (164), Expect = 7e-31 Identities = 190/262 (73%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 || ||||| | || | || ||||| |||||| | ||||||||| | | | || Sbjct 329973 GAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCA 329914 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 || | || ||| ||||||||||||| ||||| ||||| ||||||||||||||| Sbjct 329913 ACTTCTGTATTTATTATCGCCTTCATTGCCATTCCTCCAGTAGATATTGATGGTATTCGT 329854 Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172 ||||| || | || ||| || | ||||| ||||| || || || ||||| || | || Sbjct 329853 GAACCTGTTTCAGGATCTCTACTTTATGGCAACAATATTATTTCCGGTGCCATTATTCCG 329794 Query 155173 AGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAG 155232 | ||| || || ||| | ||||| ||||| || |||||||| || || ||||||| Sbjct 329793 ACTTCTGCAGCTATAGGTTTGCACTTTTATCCAATCTGGGAAGCGGCTTCTGTTGATGAA 329734 Query 155233 TGGTTGTACAATGGTGGTCCTT 155254 ||||| ||||| |||||||||| Sbjct 329733 TGGTTATACAACGGTGGTCCTT 329712 >seq4 Length=35924511 Score = 138 bits (152), Expect = 1e-27 Identities = 182/251 (73%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 155713 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGG 155772 ||||||||||| | | | ||||||||||| ||||| |||||||| | | |||||| Sbjct 4757228 TTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAATAAGTATCTGG 4757287 Query 155773 GCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 155832 |||||| | ||| | || ||| | |||||||| || | |||||| |||||||| Sbjct 4757288 TTTACTGCTTTAGGTATCAGCACTATGACTTTCAACCTAAATGATTTCAATTTCAACCAA 4757347 Query 155833 TCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGC 155889 |||||||| || |||| | || || ||| || || || || |||||||| Sbjct 4757348 TCTGTAGTTGA---TAGTCAAGCCTGTGTAATTAATACTTGAGCTGATATCATTAACCGC 4757404 Query 155890 GCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTT 155949 ||| |||||||| ||||| |||| ||| | ||| ||||| |||||| |||| ||| | Sbjct 4757405 GCTAATCTTGGTAAAGAAGTTATGCTCGAACATAATGCTCATAACTTCTCTCTAGACTTA 4757464 Query 155950 GCTGCTGCTGA 155960 ||||||| ||| Sbjct 4757465 GCTGCTGTTGA 4757475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584799919816560