Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq4825 536 3e-148 seq6 307 3e-79 seq8 255 2e-63 seq36 145 2e-30 seq4 118 3e-22 >seq4825 Length=155848 Score = 536 bits (594), Expect = 3e-148 Identities = 720/996 (72%), Gaps = 8/996 (1%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||||||||||||| ||||| ||||| ||||| |||||||| ||||||||| Sbjct 286 TCAACAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCGTGCATAACTTCCATA 345 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || || | | ||||| | ||||||||||||| ||| || || | | || Sbjct 346 CCAAGGTTAGCGCGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCA 405 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATG 40703 ||||| || ||||| || || |||||||| ||||| ||||||||||| ||||| | Sbjct 406 ACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAA 465 Query 40704 GAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTA 40763 | |||| ||| || || | || || ||||| | || |||||||||| | ||| Sbjct 466 GCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAG 525 Query 40764 TTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATG 40823 |||||||| ||||||||| || |||| || ||||| ||||| || || |||||||| Sbjct 526 TTGTTGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATA 585 Query 40824 TTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTG 40883 |||||||| || |||| || || ||| | || || | || |||||| |||| ||| Sbjct 586 TTATAAGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 645 Query 40884 GTCTCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCA 40940 || |||| || | | |||| || ||| | || ||||||||| ||| | | | Sbjct 646 GTTTCCCTGATCAAACTAGAGGT--TACCAAAGAA-CCATGCATAGCACTAAATAGGGAA 702 Query 40941 CCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCT 41000 || || || || || || ||||| | ||| || ||||||||||| || |||||||| || Sbjct 703 CCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 762 Query 41001 GCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAG 41060 || ||||| |||| |||||||||||| || ||| |||||||| ||||||||||||||| Sbjct 763 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 822 Query 41061 AAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCT 41120 || || ||||||| ||| || | ||||| ||||| ||| |||| | |||||| Sbjct 823 AAGCTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 882 Query 41121 GTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTA 41180 | ||||| ||| ||||| |||| ||||||||| | | | ||| ||||||| | | Sbjct 883 GAATATGCAACAGCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCTCCCACTCACGA 942 Query 41181 CCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCG 41240 || ||| ||||| || | ||||||||| | || || | || ||| || || ||| Sbjct 943 CCCATGTAACAAGCTACACCAAGTAAAAAGTGTAGAACGATTAATTCATAAGGACCACCG 1002 Query 41241 TTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATT 41300 ||||||| ||| || || | | | |||||||||||||| || || || | || || Sbjct 1003 TTGTATAACCATTCATCAACAGAAGCCGCTTCCCAGATTGGATAAAAGTGCAAACCTATA 1062 Query 41301 GCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCG 41360 || ||| |||||| | || || || ||||||||||| || || | || || || Sbjct 1063 GCTGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCCATAAAGTAGAGATCCA 1122 Query 41361 GAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATG 41420 ||||| || ||||| || ||||| |||||||| || || || || || |||||||| || Sbjct 1123 GAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATA 1182 Query 41421 AA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTA 41479 || ||| | || || || | ||| | || ||||| | ||||||||||| || | ||| Sbjct 1183 AATACA-GAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTA 1241 Query 41480 TAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 || ||||| |||||||| || | ||||||||| || Sbjct 1242 AAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 1277 >seq6 Length=36610139 Score = 307 bits (340), Expect = 3e-79 Identities = 438/612 (72%), Gaps = 7/612 (1%) Strand=Plus/Minus Query 40575 ACTTCCATACCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCA 40634 || |||||||| || | | ||||| | ||||||||||||| ||| || || Sbjct 34153092 ACCTCCATACCAAGGTTAGCGCGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCT 34153033 Query 40635 TTAGCGTCTACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGAT 40694 | | || ||||| || ||||| || || |||||||| ||||| ||||||||||| Sbjct 34153032 TGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTG 34152973 Query 40695 ATACCCATGGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGC 40754 ||||| | | |||| ||| || || | || || ||||| | || |||||||||| Sbjct 34152972 ATACCTAAAGCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAA 34152913 Query 40755 GCACGGCTATTGTTGAATGAAGCATATTGAAATATTAGTCT-ACCAAAGTAACCGTGTGC 40813 | ||| |||||||| ||||||||| || |||| || |||||| ||||| || || Sbjct 34152912 GAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGGACCAAAATAACCATGAGC 34152853 Query 40814 AGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTC 40873 |||||||| |||||||| || |||| || || ||| | || || | || ||||| Sbjct 34152852 GGCTACGATATTATAAGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATTC 34152793 Query 40874 AGTTTCCGTGGTCTCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGC 40930 | |||| ||||| |||| || | | |||| || ||| | || ||||||||| Sbjct 34152792 ATTTTCTGTGGTTTCCCTGATCAAACTAGAGGT--TACCAAAGAA-CCATGCATAGCACT 34152736 Query 40931 AAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAAT 40990 ||| | | ||| || || || || || ||||| | ||| || ||||||||||| || || Sbjct 34152735 AAATAGGGAACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGAT 34152676 Query 40991 GTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCAT 41050 |||||| || || ||||| |||| |||||||||||| || ||| |||||||| |||||| Sbjct 34152675 GTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCAT 34152616 Query 41051 ACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGA 41110 ||||||||| || || ||||||| ||| || | ||||| ||||| ||| |||| Sbjct 34152615 ACCATCAGAAAAGCTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGC 34152556 Query 41111 CAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTC 41170 | ||||||| ||||| ||| ||||| |||| ||||||||| | | | ||| || Sbjct 34152555 AACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCTC 34152496 Query 41171 CCACTGTCTACC 41182 || || ||| || Sbjct 34152495 CCTCTCTCTCCC 34152484 Score = 82.4 bits (90), Expect = 2e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||||||||||||| ||||| ||||| ||||| |||||||| ||||||||| Sbjct 7295972 TCAACAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCGTGCATAACTTCCATA 7295913 Query 40584 CCTAG 40588 || || Sbjct 7295912 CCAAG 7295908 >seq8 Length=31745509 Score = 255 bits (282), Expect = 2e-63 Identities = 344/476 (72%), Gaps = 6/476 (1%) Strand=Plus/Minus Query 40732 AAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTA 40791 ||||| | || |||||||||| | ||| |||||||| ||||||||| || |||| Sbjct 5169169 AAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTA 5169110 Query 40792 GTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACT 40851 || ||||| ||||| || || |||||||| |||||||| || |||| || || ||| Sbjct 5169109 ATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGCCCGAACC 5169050 Query 40852 TATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGA---TTGAGGAAGTAA 40908 | || || | || |||||| |||| ||||| |||| || | | |||| || Sbjct 5169049 TGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGT--TAC 5168992 Query 40909 CAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCA 40968 ||| | || ||||||||| ||| | | ||| || || || || || ||||| | || Sbjct 5168991 CAAAGAA-CCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACGCCTAACA 5168933 Query 40969 TATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATG 41028 | || ||||||||||| || |||||||| || || ||||| |||| |||||||||||| | Sbjct 5168932 TGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAG 5168873 Query 41029 TTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTA 41088 | ||| |||||||| ||||||||||||||| || || ||||||| ||| || | | Sbjct 5168872 TACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCGATTGGGTAGATCA 5168813 Query 41089 AGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCA 41148 |||| ||||| ||| |||| | ||||||| ||||| ||| ||||| |||| || Sbjct 5168812 AGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCA 5168753 Query 41149 TACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATT 41204 ||||||| | | | ||| ||||||| | ||| ||| ||||||||| || Sbjct 5168752 TACCTAGACGGAAACTAAGCTCCCACTCACGACCCATGTAACAAGCTACTCCTCTT 5168697 Score = 125 bits (138), Expect = 2e-24 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 41311 TCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCT 41370 |||||| | || || || ||||||||||| || || | || || || ||||| || | Sbjct 2878889 TCGGAATAATGGCACCGGAAATAATATTGTTGCCATAAAGTAGAGATCCAGAAACAGGTT 2878830 Query 41371 CACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTG 41429 |||| || ||||| |||||||| || || || || || |||||||| || || ||| | Sbjct 2878829 CACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACA-GAA 2878771 Query 41430 GTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTG 41489 || || || | ||| | || ||||| | ||||||||||| || | ||| || ||||| Sbjct 2878770 GTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTT 2878711 Query 41490 TCGGTGCTAGTGACCCAGTTACAAAA 41515 |||||||| || | ||||||||| || Sbjct 2878710 TCGGTGCTGGTTATCCAGTTACAGAA 2878685 >seq36 Length=917149 Score = 145 bits (160), Expect = 2e-30 Identities = 209/292 (72%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 41225 TTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTA 41284 || ||| || || |||||||||| ||| || || | | | |||||||||||||| || Sbjct 329707 TTCATAAGGACCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCAGATTGGATA 329766 Query 41285 GAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCC 41344 || || | || || || ||| |||||| | || || || ||||||||||| || Sbjct 329767 AAAGTGCAAACCTATAGCTGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCC 329826 Query 41345 GTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGC 41404 || | || || || ||||| || ||||| || ||||| |||||||| || || || Sbjct 329827 ATAAAGTAGAGATCCTGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAATGGC 329886 Query 41405 GATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACAC 41463 || |||||||| || || ||| | || || || | ||| | || ||||| | |||| Sbjct 329887 AATGAAGGCGATAATAAATACA-GAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACAC 329945 Query 41464 CAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||||| || | ||| || ||||| |||||||| || | | ||||||| || Sbjct 329946 CAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCTAGTTACAGAA 329997 >seq4 Length=35924511 Score = 118 bits (130), Expect = 3e-22 Identities = 181/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| |||||||||||||| ||||| ||||| ||| | ||| |||| ||||| || Sbjct 4757475 TCAACAGCAGCTAAGTCTAGAGAGAAGTTATGAGCATTATGTTCGAGCATAACTTCTTTA 4757416 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || ||| | | ||||| | |||||| |||||| ||| || | | | || Sbjct 4757415 CCAAGATTAGCGCGGTTAATGATATCAGCTCAAGTATTAATTACACAGGCTTGACTATCA 4757356 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATG 40703 ||||| || ||||| || || ||| |||| ||||| |||| |||||| ||||| | Sbjct 4757355 ACTACAGATTGGTTGAAATTGAAATCATTTAGGTTGAAAGTCATAGTGCTGATACCTAAA 4757296 Query 40704 GAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTA 40763 | |||| ||| || | || || || ||||| | || |||||||||| | ||| Sbjct 4757295 GCAGTAAACCAGATACTTATTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAG 4757236 Query 40764 TTGTTGAATGAAGCATAT 40781 |||||||| ||||||| Sbjct 4757235 TTGTTGAAACTAGCATAT 4757218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143694164595084