Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq4825 601 4e-167 seq6 408 5e-109 seq8 349 4e-91 seq36 141 1e-28 seq4 134 2e-26 >seq4825 Length=155848 Score = 601 bits (666), Expect = 4e-167 Identities = 707/955 (74%), Gaps = 6/955 (1%) Strand=Plus/Plus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||||||| | ||| ||||||||||| ||||| ||||| ||||||||||||||||| Sbjct 286 TCAACAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCGTGCATAACTTCCATA 345 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG--- 67469 ||||| || | ||||| ||| || ||||||||| ||| || || ||| Sbjct 346 CCAAGGTTAGCGCGGTTAATGATATCAGCCCAAGTATTAATTAC---ACGGCCTTGACTA 402 Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCC 67529 ||||| || ||||||||||| |||||||| || |||||||| |||||||| | ||| Sbjct 403 TCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCT 462 Query 67530 ATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTT 67589 | ||||| |||||||| | || ||||| | ||||| ||||||||||| | | | Sbjct 463 AAAGCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGA 522 Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 |||||||||||| ||||| |||||||| || || || || || |||||||| || || Sbjct 523 GAGTTGTTGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACG 582 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || ||||| ||||||||||| |||||| ||||||| | || || || | || Sbjct 583 ATATTATAAGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATTCATTTTCT 642 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || ||||| ||||| | | ||| || || | |||||| |||||||||||||| || ||| Sbjct 643 GTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAA 702 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 || ||||||||||| ||||| || | ||| || |||||||||||||||||||||||||| Sbjct 703 CCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 762 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAG 67889 || ||||| || | |||| |||| ||||||||||| || || |||||||| | ||||| Sbjct 763 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 822 Query 67890 AAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCA 67949 || |||||||||| || |||| |||||| ||||| || || | || ||||| Sbjct 823 AAGCTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 882 Query 67950 GAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGA 68009 || ||||| ||| |||||||| |||||||| |||||| || ||| ||||||| |||| Sbjct 883 GAATATGCAACAGCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCTCCCACTCACGA 942 Query 68010 CCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCA 68069 || ||| | | || | | ||||| | || | | || |||| ||||| Sbjct 943 CCCATGTAACAAGCTACACCAAGTAAAAAGTGTAGAACGATTAATTCATAAGGACCACCG 1002 Query 68070 TTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATT 68129 || || ||||| ||||| | || || ||||||||||| ||||| ||||| | ||| || Sbjct 1003 TTGTATAACCATTCATCAACAGAAGCCGCTTCCCAGATTGGATAAAAGTGCAAACCTATA 1062 Query 68130 GCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCT 68189 || ||| | |||| || ||||| ||||| || ||||| || || | || || || Sbjct 1063 GCTGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCCATAAAGTAGAGATCCA 1122 Query 68190 GCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATG 68249 | ||||||||| | |||||||| ||||| |||||||| || |||||||| || || || Sbjct 1123 GAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATA 1182 Query 68250 AAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 || || | ||| | | || ||| |||||||| ||||| ||||| |||| Sbjct 1183 AATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAA 1237 >seq6 Length=36610139 Score = 408 bits (452), Expect = 5e-109 Identities = 455/605 (75%), Gaps = 7/605 (1%) Strand=Plus/Minus Query 67404 ACTTCCATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCA 67463 || ||||| ||||| || | ||||| ||| || ||||||||| ||| || || Sbjct 34153092 ACCTCCATACCAAGGTTAGCGCGGTTAATGATATCAGCCCAAGTATTAATTAC---ACGG 34153036 Query 67464 CCTGCG---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTT 67520 ||| ||||| || ||||||||||| |||||||| || |||||||| |||||||| Sbjct 34153035 CCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTG 34152976 Query 67521 GACACACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGA 67580 | ||| | ||||| |||||||| | || ||||| | ||||| ||||||||||| Sbjct 34152975 CTGATACCTAAAGCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGT 34152916 Query 67581 AGACTTCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCG-ACCGAAGTATCCATG 67639 | | | |||||||||||| ||||| |||||||| || || ||| || || ||||| Sbjct 34152915 AAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGGACCAAAATAACCATG 34152856 Query 67640 AGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGA 67699 ||| || || || || ||||| ||||||||||| |||||| ||||||| | || || Sbjct 34152855 AGCGGCTACGATATTATAAGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGA 34152796 Query 67700 CTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACT 67759 || | || || ||||| ||||| | | ||| || || | |||||| ||||||||||| Sbjct 34152795 TTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACT 34152736 Query 67760 AAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGAT 67819 ||| || ||||| ||||||||||| ||||| || | ||| || ||||||||||||||||| Sbjct 34152735 AAATAGGGAACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGAT 34152676 Query 67820 GTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCAT 67879 ||||||||| || ||||| || | |||| |||| ||||||||||| || || |||||||| Sbjct 34152675 GTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCAT 34152616 Query 67880 TGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGA 67939 | ||||| || |||||||||| || |||| |||||| ||||| || || | Sbjct 34152615 ACCATCAGAAAAGCTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGC 34152556 Query 67940 CACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTC 67999 || ||||| || ||||| ||| |||||||| |||||||| |||||| || ||| || Sbjct 34152555 AACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCTC 34152496 Query 68000 CCACT 68004 || || Sbjct 34152495 CCTCT 34152491 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||||||| | ||| ||||||||||| ||||| ||||| ||||||||||||||||| Sbjct 7295972 TCAACAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCGTGCATAACTTCCATA 7295913 Query 67413 CCAAG 67417 ||||| Sbjct 7295912 CCAAG 7295908 >seq8 Length=31745509 Score = 349 bits (386), Expect = 4e-91 Identities = 352/458 (77%), Gaps = 0/458 (0%) Strand=Plus/Minus Query 67554 ACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGG 67613 ||||| | ||||| ||||||||||| | | | |||||||||||| ||||| ||| Sbjct 5169176 ACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 5169117 Query 67614 AAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGT 67673 ||||| || || || || || |||||||| || || || || ||||| ||||||||||| Sbjct 5169116 AAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGC 5169057 Query 67674 CCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAA 67733 |||||| ||||||| | || || || | || || ||||| ||||| | | ||| Sbjct 5169056 CCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 5168997 Query 67734 GTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCA 67793 || || | |||||| |||||||||||||| || ||||| ||||||||||| ||||| || Sbjct 5168996 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACGCCT 5168937 Query 67794 AGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTA 67853 | ||| || |||||||||||||||||||||||||| || ||||| || | |||| |||| Sbjct 5168936 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 5168877 Query 67854 AAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAG 67913 ||||||||||| || || |||||||| | ||||| || |||||||||| || ||| Sbjct 5168876 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCGATTGGGTAG 5168817 Query 67914 ACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGA 67973 | |||||| ||||| || || | || ||||| || ||||| ||| |||||||| Sbjct 5168816 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGT 5168757 Query 67974 CGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC 68011 |||||||| |||||| || ||| ||||||| |||||| Sbjct 5168756 CGCATACCTAGACGGAAACTAAGCTCCCACTCACGACC 5168719 >seq36 Length=917149 Score = 141 bits (156), Expect = 1e-28 Identities = 179/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 68059 AAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGT 68118 |||| ||||| || || ||||| ||||| | || || ||||||||||| ||||| |||| Sbjct 329712 AAGGACCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCAGATTGGATAAAAGT 329771 Query 68119 GAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACA 68178 | | ||| || || ||| | |||| || ||||| ||||| || ||||| || || | Sbjct 329772 GCAAACCTATAGCTGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCCATAAA 329831 Query 68179 TGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGA 68238 || || |||| ||||||||| | |||||||| ||||| |||||||| ||||||| Sbjct 329832 GTAGAGATCCTGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAATGGCAATGA 329891 Query 68239 ATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACC 68298 | || || || || || | ||| | | || ||| |||||||| ||||| |||| Sbjct 329892 AGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACC 329951 Query 68299 AACCAA 68304 | |||| Sbjct 329952 ATCCAA 329957 >seq4 Length=35924511 Score = 134 bits (148), Expect = 2e-26 Identities = 187/263 (71%), Gaps = 12/263 (5%) Strand=Plus/Minus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||||||| | ||| |||| |||||| ||||| ||| | ||| |||||||||| | Sbjct 4757475 TCAACAGCAGCTAAGTCTAGAGAGAAGTTATGAGCATTATGTTCGAGCATAACTTCTTTA 4757416 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCAC------TTTACCACCT 67466 ||||| || | ||||| ||| || || |||||| ||| || || || | Sbjct 4757415 CCAAGATTAGCGCGGTTAATGATATCAGCTCAAGTATTAATTACACAGGCTTGACTA--- 4757359 Query 67467 GCGTCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACA 67526 ||||| || ||||||||||| |||||| | || |||||||| | |||||| | | Sbjct 4757358 ---TCAACTACAGATTGGTTGAAATTGAAATCATTTAGGTTGAAAGTCATAGTGCTGATA 4757302 Query 67527 CCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTT 67586 || | ||||| |||||||| | | ||||| | ||||| ||||||||||| | | Sbjct 4757301 CCTAAAGCAGTAAACCAGATACTTATTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAA 4757242 Query 67587 CTTGAGTTGTTGAAAGATGCATA 67609 | |||||||||||| ||||| Sbjct 4757241 CGAGAGTTGTTGAAACTAGCATA 4757219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566912998910160