Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3 118 2e-21 seq6 100 5e-16 seq1 100 5e-16 >seq3 Length=50312079 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| | | ||||||||| | || | || || ||| || || || Sbjct 6143953 ATGCCACCTCTCAACCTCAATACCAGATGAAGAGTGGATTCCTTTTGAATGTTGTAATCA 6143894 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || ||| ||| || ||||| || || |||||||| || ||||| || || || Sbjct 6143893 GCCAATGTCCTACCATCCTCCAATTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGG 6143834 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || ||||| ||||| | ||| | ||| ||| ||||| ||| || Sbjct 6143833 GGAATTCCCTCCTTGTCTTGAATTTTCGCTTTCACATTGTCAATTGTATCAGAACTTTCT 6143774 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || || || || ||||| |||||||| Sbjct 6143773 ACTTCAAGGGTAATCGTCTTCCCAGTGAGAGTCTTAACAAAGATTTGCAT 6143724 Score = 89.7 bits (98), Expect = 9e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || |||||||| | ||||| || || || || || || || || || || || Sbjct 6143641 TGCTTGCCAGCAAAAATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATC 6143582 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||| | ||| ||||||||| ||| |||||||||||||| ||||| || || Sbjct 6143581 TTAGCTTTGACATTATCAATAGTATCAGAACTTTCAACTTCTAGAGTGATAGTCTTTCCG 6143522 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || || ||||| || || |||||| Sbjct 6143521 GTAAGGGTCTTTACGAAAATCTGCATT 6143495 Score = 87.8 bits (96), Expect = 3e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| ||| | || | ||| || ||| || || |||| || || | | Sbjct 6143482 CGCAGAACCAAATGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGCCAAGGTCCGTCCA 6143423 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || |||| ||||| || ||||| || | ||||| || || || || || || || || Sbjct 6143422 TCCTCTAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTG 6143363 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | ||| | ||| ||| ||||| || || ||||||||||| ||| Sbjct 6143362 TCCTGGATCTTAGCTTTGACATTATCAATGGTATCAGAGCTTTCGACTTCTAGAGTGATA 6143303 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || |||||||| || |||||| Sbjct 6143302 GTCTTGCCAGTAAGTGTCTTTACAAAAATCTGCATT 6143267 >seq6 Length=36610139 Score = 100 bits (110), Expect = 5e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | ||||| || || || | |||| ||||| || || ||||||| Sbjct 34407899 ACCACCACGAAGACGAAGGACAAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCGGC 34407840 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || || ||| |||| || ||||| ||||| || || ||||| ||||| ||||| Sbjct 34407839 CAAAGTCCTTCCATCCTCTAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGG 34407780 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || || ||||| || || || || | || | ||| ||| || || || ||||| Sbjct 34407779 GATGCCCTCTTTGTCCTGAATCTTCGCCTTCACATTATCAATCGTGTCCGAGCTTTCAAC 34407720 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||| || || || || || | ||| || ||||| || ||||| Sbjct 34407719 TTCTAGAGTGATCGTCTTCCCAGTCAACGTCTTGACAAAGATCTGCAT 34407672 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| ||| | || | || || |||||||||||| | ||| || || | Sbjct 34406746 CGAAGAACCAAATGAAGGGTGGATTCCTTCTGAATATTATAGTCAGCTAAAGTCCTTCCA 34406687 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||| || ||||| || | ||||| ||||| ||||| || ||||| || Sbjct 34406686 TCCTCGAGCTGTTTGCCCGCAAAGATAAGCCTCTGCTGATCGGGAGGGATGCCTTCCTTG 34406627 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | ||| || || || || ||||| || || ||||| Sbjct 34406626 TCTTGAATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCAACCTCAAGGGTTATG 34406567 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| ||||| || ||||| Sbjct 34406566 GTCTTTCCGGTAAGAGTTTTCACAAAGATCTGCAT 34406532 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||||||| | || | || || |||||| || || | ||| || | | | Sbjct 34406974 CGAAGAACCAGATGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCTAATGTACGACCA 34406915 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||| || || || || | ||||| ||||||||||| || ||||| || Sbjct 34406914 TCCTCAAGCTGTTTGCCCGCGAAGATAAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTG 34406855 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | ||| ||| || || || |||||||||| || || Sbjct 34406854 TCCTGAATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACTTCTAAGGTAATG 34406795 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| ||||| || ||||| Sbjct 34406794 GTCTTGCCAGTGAGTGTTTTAACAAAGATCTGCAT 34406760 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||| | || || |||| || | |||| ||||| |||||| ||||| Sbjct 34407673 ATCCCACCTCTAAGACGGAGCACCAAGTGGAGGGTAGATTCTTTCTGAATATTGTAGTCA 34407614 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| || | || || || |||||||| | ||||| || || || Sbjct 34407613 GCAAGGGTACGACCATCCTCAAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGT 34407554 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || ||||| | || | ||| ||| || || || ||| Sbjct 34407553 GGGATGCCTTCTTTATCCTGAATTTTTGCCTTCACATTATCAATTGTGTCTGAGCTCTCC 34407494 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || | ||| || || || ||||| | || || ||||| || |||||| Sbjct 34407493 ACCTCCAAAGTAATTGTCTTTCCTGTCAATGTCTTCACAAAAATCTGCATT 34407443 >seq1 Length=51465339 Score = 100 bits (110), Expect = 5e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||||| || ||||| || || | ||||||||||| || || | | Sbjct 30446272 ATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGGCGT 30446331 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || ||||| || |||||||| ||||| ||||||| ||| | ||| || || Sbjct 30446332 TGCTGGTCGGGAGGGATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTGTCGATGGTG 30446391 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| || || || || || || || ||||| || || || |||||||| || || ||| Sbjct 30446392 TCGGAGGATTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTTACGAAGATCTGC 30446451 Query 193359 ATT 193361 ||| Sbjct 30446452 ATT 30446454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899600128348320