Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1 107 3e-18 seq6 98.7 1e-15 seq3 93.3 6e-14 seq2 91.5 2e-13 >seq1 Length=51465339 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || |||||||||| ||||| || || ||||| || || Sbjct 45561473 ATGCAGATCTTTGTTAAGACTCTGACTGGAAAGACTATCACCTTGGAAGTGGAGAGCTCC 45561532 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| || || || ||||| ||||| || |||||||| || Sbjct 45561533 GACACCATTGATAATGTGAAGGCCAAGATTCAGGATAAGGAAGGTATTCCTCCAGATCAG 45561592 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| ||||||||||| || ||| || || | ||||||| ||| Sbjct 45561593 CAGAGGTTGATCTTTGCTGGTAAGCAGCTTGAGGATGGAAGGACCCTTGCAGATTACAAT 45561652 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | || ||||| || ||||| Sbjct 45561653 ATCCAGAAGGAGTCTACCCTTCACTTGGTGTT 45561684 >seq6 Length=36610139 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || |||||||| ||||| || ||||| || || || || || Sbjct 34407443 AATGCAGATTTTTGTGAAGACATTGACAGGAAAGACAATTACTTTGGAGGTGGAGAGCTC 34407502 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || ||||| ||||| || |||||||||||||| || ||||| || Sbjct 34407503 AGACACAATTGATAATGTGAAGGCAAAAATTCAGGATAAAGAAGGCATCCCACCAGACCA 34407562 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || |||||| ||| ||||||||||| || ||| Sbjct 34407563 GCAGAGGCTGATTTTTGCTGGTAAGCAGCTTGAGGAT 34407599 Score = 89.7 bits (98), Expect = 8e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || ||||||||||| || || || || || || || || || Sbjct 34642257 AATGCAAATCTTTGTGAAGACATTGACTGGCAAGACCATCACCTTGGAGGTTGAGAGCTC 34642316 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || ||||| ||||| || || ||||| || || || ||||| || Sbjct 34642317 AGATACAATTGATAATGTGAAGGCGAAAATCCAGGACAAAGAGGGAATCCCACCAGATCA 34642376 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | ||||||| ||| || |||||| | || ||| ||||| | | || || || Sbjct 34642377 ACAGCGTTTGATTTTTGCTGGAAAGCAGTTGGAGGATGGAAGAACCCTGGCTGACTACAA 34642436 Query 156002 TATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 34642437 CATCCAGAAAGAGTCCACCCTTCA 34642460 >seq3 Length=50312079 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| | ||||| || || || || | || || ||| ||| Sbjct 6143040 ATGCAGATATTTGTGAAAACTCTTACTGGCAAGACAATCACCCTCGAGGTTGAAAGTTCG 6143099 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || ||| || || ||||| || ||||| || |||||||| || Sbjct 6143100 GACACTATTGACAATGTCAAAGCGAAGATTCAAGACAAGGAAGGTATCCCTCCAGATCAG 6143159 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| || ||| | || ||| | ||||| || Sbjct 6143160 CAGAGGCTCATCTTTGCTGGTAAGCAGCTAGAGGATGGACGGACCTTAGCTGATTACAAC 6143219 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| |||| |||||||| || Sbjct 6143220 ATTCAGAAGGAGTCGACCCTTCATTTGGT 6143248 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || ||| | ||||| || ||||| || ||||||||||| || Sbjct 6143267 AATGCAGATTTTTGTAAAGACACTTACTGGCAAGACTATCACTCTAGAAGTCGAAAGCTC 6143326 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| || || ||| ||| || || || || || || || || ||||| || Sbjct 6143327 TGATACCATTGATAATGTCAAAGCTAAGATCCAGGACAAGGAGGGTATCCCACCAGACCA 6143386 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| ||||| ||||| || ||| | || || | ||||| || Sbjct 6143387 GCAGAGGCTCATCTTTGCTGGTAAACAGCTAGAGGATGGACGGACCTTGGCCGATTACAA 6143446 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| |||| |||||||| || Sbjct 6143447 CATTCAGAAGGAGTCGACCCTTCATTTGGT 6143476 Score = 89.7 bits (98), Expect = 8e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | || || | || ||||| ||||| || ||||||| ||| ||| Sbjct 6143495 AATGCAGATTTTCGTAAAGACCCTTACCGGAAAGACTATCACTCTAGAAGTTGAAAGTTC 6143554 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| |||| || || ||| ||| || || || || || || || || ||||| || Sbjct 6143555 TGATACTATTGATAATGTCAAAGCTAAGATCCAGGACAAGGAGGGTATCCCACCAGACCA 6143614 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || | |||| ||| || ||||||||||||||| Sbjct 6143615 GCAGAGGCTCATTTTTGCTGGCAAGCAGCTCGAAGAT 6143651 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || ||||||||||| || || || || || || || || || Sbjct 6144180 ATGCAAATCTTTGTAAAGACATTGACTGGCAAGACAATCACCTTGGAGGTGGAGAGCTCA 6144239 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| ||| || |||||||| || || || || ||||| || Sbjct 6144240 GACACCATCGATAACGTGAAGGCTAAGATCCAAGATAAGGAGGGAATTCCACCAGATCAG 6144299 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| || |||||| | |||||| || || ||| | || || || Sbjct 6144300 CAGAGGTTGATTTTTGCTGGAAAGCAGTTGGAAGATGGAAGGACCTTAGCGGACTACAAC 6144359 Query 156003 AT 156004 || Sbjct 6144360 AT 6144361 >seq2 Length=43913520 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| |||| ||||| || || || || || || ||| |||| Sbjct 39747122 ATGCAGATCTTTGTGAAAACTCTGACCGGAAAGACCATCACCTTGGAGGTGGAAAGTTCT 39747181 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| ||| || || || || || |||||||| ||||| || || Sbjct 39747182 GACACAATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 39747241 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACT 155987 ||| | | |||| || |||||||||||||||||| ||| ||| Sbjct 39747242 CAACGTCTTATTTTCGCTGGTAAGCAGCTCGAAGATGGCAGGACT 39747286 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||| ||||| |||||||| | || || || || Sbjct 39747578 ATGCAGATTTTCGTCAAGACCTTGACAGGAAAGACTATTACCCTTGAGGTTGAGAGCTCG 39747637 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || |||||| ||| || || ||||| ||||| || || ||||| || Sbjct 39747638 GATACTATTGACAATGTGAAAGCTAAGATCCAGGATAAGGAAGGGATCCCACCAGACCAG 39747697 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| || || ||||| || | ||||| || Sbjct 39747698 CAGAGGCTCATCTTTGCTGGTAAGCAGCTTGAGGACGGAAGAACCCTAGCTGATTACAAC 39747757 Query 156003 AT 156004 || Sbjct 39747758 AT 39747759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731827849821600