Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3 113 8e-20 seq6 105 1e-17 seq2 96.9 6e-15 seq15 89.7 9e-13 >seq3 Length=50312079 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | | ||||| | ||| | ||| | || || ||| || ||||| Sbjct 6143953 ATGCCACCTCTCAACCTCAATACCAGATGAAGAGTGGATTCCTTTTGAATGTTGTAATCA 6143894 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | | | || |||||||| |||||||||||||| || ||||| ||||| || Sbjct 6143893 GCCAATGTCCTACCATCCTCCAATTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGG 6143834 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || || ||||| ||||| ||| ||||| || ||||| || |||| Sbjct 6143833 GGAATTCCCTCCTTGTCTTGAATTTTCGCTTTCACATTGTCAATTGTATCAGAACTTTCT 6143774 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || ||||| || || ||||| | || |||| || || ||||| Sbjct 6143773 ACTTCAAGGGTAATCGTCTTCCCAGTGAGAGTCTTAACAAAGATTTGCAT 6143724 Score = 104 bits (114), Expect = 4e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||| | || | ||| || ||| || ||||| | || | ||| | || || Sbjct 6143476 ACCAAATGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGCCAAGGTCCGTCCATCCTCT 6143417 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | |||||||||||||| || | ||||| ||||| ||||| || || || || || || Sbjct 6143416 AGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 6143357 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || ||| ||| |||||| || ||||| || ||| ||||||||||| || || || Sbjct 6143356 ATCTTAGCTTTGACATTATCAATGGTATCAGAGCTTTCGACTTCTAGAGTGATAGTCTTG 6143297 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | ||| || | || ||||||||| Sbjct 6143296 CCAGTAAGTGTCTTTACAAAAATCTGCATT 6143267 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||||||||| | ||||| ||||| ||||| || || || || || || || Sbjct 6143641 TGCTTGCCAGCAAAAATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATC 6143582 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| ||| |||||| |||||||| || ||| ||||||||||| || || || || Sbjct 6143581 TTAGCTTTGACATTATCAATAGTATCAGAACTTTCAACTTCTAGAGTGATAGTCTTTCCG 6143522 Query 172044 GTTAATGTTTTAATGAATATCTGCATT 172070 || | || || | ||| ||||||||| Sbjct 6143521 GTAAGGGTCTTTACGAAAATCTGCATT 6143495 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| ||| || ||| || || || | ||| | | | | || ||||| || || ||| Sbjct 6144376 GTAGACTCCTTCTGAATGTTGTAGTCCGCTAAGGTCCTTCCATCTTCCAACTGCTTTCCA 6144317 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 |||||||| || ||||| || || ||||| ||||| || |||||||| || ||| || Sbjct 6144316 GCAAAAATCAACCTCTGCTGATCTGGTGGAATTCCCTCCTTATCTTGGATCTTAGCCTTC 6144257 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 || ||| || || ||||| || || || | || || || || ||||| ||||| Sbjct 6144256 ACGTTATCGATGGTGTCTGAGCTCTCCACCTCCAAGGTGATTGTCTTGCCAGTCAATGTC 6144197 Query 172053 TTAATGAATATCTGCAT 172069 || | || || ||||| Sbjct 6144196 TTTACAAAGATTTGCAT 6144180 Score = 84.2 bits (92), Expect = 4e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||| | || | ||| || ||| || ||||| | ||| | ||| | || || Sbjct 6143248 ACCAAATGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGCTAAGGTCCGTCCATCCTCT 6143189 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | || ||||||||||| || | ||||| || || || || || ||||| || ||||| Sbjct 6143188 AGCTGCTTACCAGCAAAGATGAGCCTCTGCTGATCTGGAGGGATACCTTCCTTGTCTTGA 6143129 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || ||| ||||| ||||| || || ||| || || || || || || || Sbjct 6143128 ATCTTCGCTTTGACATTGTCAATAGTGTCCGAACTTTCAACCTCGAGGGTGATTGTCTTG 6143069 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||| | ||||||||||| Sbjct 6143068 CCAGTAAGAGTTTTCACAAATATCTGCAT 6143040 >seq6 Length=36610139 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| || | || || || | |||| ||||| |||||| || || Sbjct 34407673 ATCCCACCTCTAAGACGGAGCACCAAGTGGAGGGTAGATTCTTTCTGAATATTGTAGTCA 34407614 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | || |||||||||||||| | ||||| ||||| ||| Sbjct 34407613 GCAAGGGTACGACCATCCTCAAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGT 34407554 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||| || ||||| || |||||| || || ||||| || Sbjct 34407553 GGGATGCCTTCTTTATCCTGAATTTTTGCCTTCACATTATCAATTGTGTCTGAGCTCTCC 34407494 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | |||||| || || || || ||||| || | || ||||||||| Sbjct 34407493 ACCTCCAAAGTAATTGTCTTTCCTGTCAATGTCTTCACAAAAATCTGCATT 34407443 Score = 104 bits (114), Expect = 4e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| |||| || || ||||||||||| | |||||| ||||| || || || || || | Sbjct 34079282 CGTCTTCCAGCTGCTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGGGGGATGCCCTCCT 34079223 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | || || || ||| ||| |||||| ||||| || || ||| |||||||| || | Sbjct 34079222 TGTCCTGGATCTTAGCTTTGACATTATCAATAGTGTCAGAGCTTTCAACTTCTAGGGTGA 34079163 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | || || ||||| | ||| |||| ||||||||||| Sbjct 34079162 TTGTCTTGCCAGTAAGTGTCTTAACAAATATCTGCAT 34079126 Score = 104 bits (114), Expect = 4e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| |||| || || ||||||||||| | |||||| ||||| || || || || || | Sbjct 34641730 CGTCTTCCAGCTGCTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGGGGGATGCCCTCCT 34641671 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | || || || ||| ||| |||||| ||||| || || ||| |||||||| || | Sbjct 34641670 TGTCCTGGATCTTAGCTTTAACATTATCAATAGTGTCAGAGCTTTCAACTTCTAGGGTGA 34641611 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| || ||||| | ||| |||| || |||||||| Sbjct 34641610 TGGTCTTTCCAGTAAGTGTCTTAACAAAGATCTGCAT 34641574 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || ||||| | || | ||| || || ||||| || Sbjct 34407217 ATACCACCACGCAGGCGGAGCACCAAATGAAGGGTTGACTCCTTCTGGATGTTATAGTCA 34407158 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || |||| || | || || ||||||||||| | ||||| ||||| ||| Sbjct 34407157 GCAAGAGTACGGCCGTCTTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGT 34407098 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || || ||| ||| |||||| ||||| || || ||| Sbjct 34407097 GGGATACCCTCCTTATCCTGAATCTTAGCTTTGACATTATCAATAGTGTCAGAGCTTTCA 34407038 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||||| || || ||||| | || |||| || |||||||| Sbjct 34407037 ACTTCTAAGGTAATAGTCTTTCCAGTAAGGGTCTTAACAAAAATCTGCAT 34406988 Score = 96.9 bits (106), Expect = 6e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| | ||| | || | || || | |||||||||||||| || | || Sbjct 34641528 AATATTGTAATCAGCTAAGGTACGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCT 34641469 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || || || || || |||||||| ||||| || ||| || ||||| || || Sbjct 34641468 CTGCTGATCTGGAGGGATACCTTCTTTGTCTTGAATCTTAGCCTTGACATTGTCAATGGT 34641409 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || |||||| || ||||| ||||| || ||||| | ||||| | || ||||| Sbjct 34641408 GTCCGAGCTTTCTACCTCAAGAGTGATGGTCTTCCCAGTAAGAGTTTTCACAAAGATCTG 34641349 Query 172067 CAT 172069 ||| Sbjct 34641348 CAT 34641346 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || || | | ||| ||||| | || | || || |||||| ||||| Sbjct 34407445 ATTCCACCCCTCAGCCTCAGTACCAAATGGAGTGTGGATTCCTTCTGAATATTGTAATCA 34407386 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | | | | || ||||| || || ||||||||||| || ||||| ||||| || Sbjct 34407385 GCCAATGTCCTTCCATCCTCCAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGG 34407326 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| ||||| || ||||| || ||||| || |||| Sbjct 34407325 GGGATTCCTTCCTTGTCTTGGATTTTTGCCTTCACATTGTCAATTGTATCCGAACTTTCT 34407266 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || || || || || | || || | || || ||||| Sbjct 34407265 ACTTCAAGGGTGATTGTCTTCCCTGTGAGGGTCTTGACAAAGATTTGCAT 34407216 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||| || || ||||||||||| || | |||||| || ||||| ||||| ||||| Sbjct 34642412 TCCTCCAACTGCTTTCCAGCAAAAATCAAACGCTGTTGATCTGGTGGGATTCCCTCTTTG 34642353 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || ||||| || |||||| || |||||||| || || || | || ||| Sbjct 34642352 TCCTGGATTTTCGCCTTCACATTATCAATTGTATCTGAGCTCTCAACCTCCAAGGTGATG 34642293 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||| ||||| || | || || |||||| Sbjct 34642292 GTCTTGCCAGTCAATGTCTTCACAAAGATTTGCATT 34642257 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| | ||| | || | || || | |||||||||||||| || | || Sbjct 34079080 AATATTGTAATCAGCTAAGGTGCGACCATCCTCAAGCTGTTTACCAGCAAAGATAAGCCT 34079021 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || || || || || ||||| || ||||| || ||| || ||||| || || Sbjct 34079020 CTGCTGATCTGGAGGGATACCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCAATGGT 34078961 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||||| |||||| || ||||| ||||| || || || | || || | || ||||| Sbjct 34078960 GTCTGAGCTTTCTACCTCAAGAGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTG 34078901 Query 172067 CAT 172069 ||| Sbjct 34078900 CAT 34078898 >seq2 Length=43913520 Score = 96.9 bits (106), Expect = 6e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 171879 TCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAA 171938 ||||| ||| || ||||| | || | || | |||| || | || ||||||||||| Sbjct 39747768 TCTTTCTGAATGTTGTAATCAGCTAGGGTTCTTCCGTCCTCAAGCTGCTTACCAGCAAAG 39747709 Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 171998 || | ||||| ||||| ||||| || ||||| ||||| || || ||| ||| ||||| Sbjct 39747708 ATGAGCCTCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTAGCTTTCACATTG 39747649 Query 171999 GTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATG 172058 |||||||| || || || || || ||||| || || || || || || || | | Sbjct 39747648 TCAATAGTATCCGAGCTCTCAACCTCAAGGGTAATAGTCTTTCCTGTCAAGGTCTTGACG 39747589 Query 172059 AATATCTGCAT 172069 || |||||||| Sbjct 39747588 AAAATCTGCAT 39747578 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| ||||| || |||||||| || || || ||||||||||| || || |||||||| | Sbjct 39748190 CGTCCTCCAACTGCTTACCAGCGAAGATCAACCTCTGTTGGTCTGGGGGAATTCCTTCCT 39748131 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || || || ||||| || |||||||| || ||||| || |||| Sbjct 39748130 TGTCTTGGATCTTGGCCTTGACATTGTCAATGGTATCTGAACTCTCAACTTCAAGGGTAA 39748071 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | || || || || || || || | || |||||||| Sbjct 39748070 TAGTCTTTCCTGTCAAGGTCTTGACAAAAATCTGCAT 39748034 >seq15 Length=668940 Score = 89.7 bits (98), Expect = 9e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| |||||||| ||||||||||| || || | ||| ||||| || || || ||||| | Sbjct 334847 CGTCCTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCGGAATACCTTCCT 334788 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | || || || ||| || || || || |||||||| || ||||| ||||||| Sbjct 334787 TGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTATCTGAGCTCTCAACTTCGAGAGTAA 334728 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | || || || || || || || | || |||||||| Sbjct 334727 TAGTCTTCCCTGTCAAGGTCTTGACAAAGATCTGCAT 334691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905081397670800