Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 190 2e-42 seq3 161 1e-33 >seq1 Length=51465339 Score = 190 bits (210), Expect = 2e-42 Identities = 222/297 (75%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||| || || |||||||| ||||||||||||||||| || ||||| |||| ||||| | Sbjct 39365992 CCGAATGTATATTCTCGATCGCGATCTGGAAGCCGTAGAACGCCCTAGCCTCCGCCACCT 39366051 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 |||||||||||||||||| |||||| || |||||| |||||||||||| ||||||| Sbjct 39366052 GGACCTCCTTCATGAACCTGCCGGCGAGATTCTCGAGCACGATGCCGTCAGAAGCGGCGA 39366111 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | ||||| || ||||| ||| ||||| ||||| | | || | | || Sbjct 39366112 AGAAAGCGAGCACGTGAGTGACGAAGTGTTTCTCGTTGGGAGTTAGGGTTTGGAAATGAG 39366171 Query 869811 CGGTGTC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | ||||| ||| | | || || || ||||||||||||| || |||||||| || ||| Sbjct 39366172 CAGTGTCTTGCGAT-AAATCGACTTCTTCGGCGGTCCAGAAGGAAGCCTCGGCTTTCTTG 39366230 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926 ||||| ||||| | ||| |||| |||||||||| | | || |||| |||||| Sbjct 39366231 TACATTTCCCAGATTTGGGGGTATTGGATAGGGAACATGCAGAACCGGTCCGGGTTG 39366287 >seq3 Length=50312079 Score = 161 bits (178), Expect = 1e-33 Identities = 217/297 (73%), Gaps = 4/297 (1%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||| || || ||||| || || ||||| || || ||||| |||||| |||| ||||| | Sbjct 34658762 CCGAATGAATATTCTCTATCGCAATCTGAAACCCATAAAAAGCCCTCGCCTCCGCCACCT 34658703 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | ||||||||||| |||| ||||||| |||||| ||| ||||| || ||||||| Sbjct 34658702 GCACCTCCTTCATAAACCTCCCGGCCAAATTCTCGAGCACAATGCCATCAGAAGCGGCGA 34658643 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 ||||||| || || || | |||||||| ||| || | | | ||||||| | Sbjct 34658642 AAAAAGCGAGAACATGGGTAATAAAGTGCTTCTCATCAGAAGTCAAAGCTTCCCAGTGAA 34658583 Query 869811 CGGTGTC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | | || | | | | || || |||||||||||||||| ||||||||||| || ||| Sbjct 34658582 CATTATCTTGAGAT-AAATCGACTTCCTCGGCGGTCCAGAAAGAGGCCTCGGCTTTCTTG 34658524 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTT 869925 ||||||||||| | || |||| | || ||||| | ||| ||||||| ||||| Sbjct 34658523 TACATCTCCCAGATCTGAGGGTATTGAATTGGGAACA-TACAGAAGCGGTCCGGGTT 34658468 Score = 95.1 bits (104), Expect = 1e-13 Identities = 129/179 (72%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 |||||||| || || | |||||| |||||||| || |||||||| || ||||||||||| Sbjct 34659000 CCGGGCATAAGCCCCCTCTTCTTCAGCCAAAAAATCGCGCAGAAGCTCCCCGAGAAAAAA 34658941 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || || || || ||||| | || | || ||| ||||| | || |||||| Sbjct 34658940 ATCCCTTCCACACAAGCAAACGCAATAATCCTCTCCGCAAACGACTC----CCCTCC--A 34658887 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC 869397 | |||||| |||||||||| | |||||| ||| || |||| | ||| || || || Sbjct 34658886 TCAATCCACCTCATCGCCCACTTGGCCTTCTTCTCGACACACGGAATCGTCTCAATCGC 34658828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106743155839842