Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 seq6 82.4 6e-11 seq2 82.4 6e-11 seq1 82.4 6e-11 >seq3 Length=50312079 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || ||| | || || || || |||||| | ||| || | Sbjct 6143724 ATGCAAATCTTTGTTAAGACTCTCACTGGGAAGACGATTACCCTTGAAGTAGAAAGTTCT 6143783 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| ||| ||| ||||| || || | ||| || || Sbjct 6143784 GATACAATTGACAATGTGAAAGCGAAAATTCAAGACAAGGAGGGAATTCCCCCAGACCAG 6143843 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | |||| ||| ||||| || ||||||||| || ||| |||| ||||||||| Sbjct 6143844 CAGAGGTTGATTTTTGCTGGTAAGCAATTGGAGGATGGTAGGACATTGGCTGATTACAAC 6143903 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| ||||| || | || |||| || || || |||| || Sbjct 6143904 ATTCAAAAGGAATCCACTCTTCATCTGGTATTGAGGTTGAGAGGTGG 6143950 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| |||||||| |||||| | || ||||| || || ||| |||| || | Sbjct 6143040 ATGCAGATATTTGTGAAAACTCTTACTGGCAAGACAATCACCCTCGAGGTTGAAAGTTCG 6143099 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || ||| ||||||| ||||| ||||| | || ||||| Sbjct 6143100 GACACTATTGACAATGTCAAAGCGAAGATTCAAGACAAGGAAGGTATCCCTCCAGATCAG 6143159 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| ||||| ||||| ||||||| | || | || ||||||||| Sbjct 6143160 CAGAGGCTCATCTTTGCTGGTAAGCAGCTAGAGGATGGACGGACCTTAGCTGATTACAAC 6143219 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| || || || || | || |||| | | || || ||||||| Sbjct 6143220 ATTCAGAAGGAGTCGACCCTTCATTTGGTTCTGCGTCTACGTGGGGGAA 6143268 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 110357 AAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAA 110416 |||||| ||||| |||||| | || || || || || ||||| | ||| || || Sbjct 6144036 AAGATTCAGGACAAGGAAGGCATCCCACCAGACCAGCAGAGGCTTATATTTGCTGGAAAG 6144095 Query 110417 CAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCAC 110476 ||||||||||||| | | ||| |||| || ||||| |||||||| || ||||| | || Sbjct 6144096 CAGCTGGAGGATGGCCGCACACTGGCCGACTACAATATTCAAAAGGAGTCTACCCTTCAT 6144155 Query 110477 ATGGTGTTAAGACTGCGAGGGGG 110499 ||||| | | ||||| || || Sbjct 6144156 CTGGTGCTTCGTCTGCGTGGAGG 6144178 >seq6 Length=36610139 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||| || ||||| || || || ||||| || | || |||| Sbjct 34079581 AATGCAGATTTTTGTGAAGACTTTGACAGGAAAGACCATCACGCTAGAGGTGGAGAGCTC 34079640 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| ||| | | | || ||| |||||| |||||||| ||| | || || || Sbjct 34079641 CGACACTATTGATAATGTCAAAGCAAAGATTCAAGACAAAGAGGGCATCCCACCAGACCA 34079700 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || ||||| | ||| || ||||| || || |||| | | ||| | || || ||||| Sbjct 34079701 GCAGAGGCTTATATTTGCTGGAAAACAACTTGAAGATGGCCGCACACTTGCAGACTACAA 34079760 Query 110452 CATTCAAAAAGAATCTAC 110469 ||||||||||| ||||| Sbjct 34079761 TATTCAAAAAGAGTCTAC 34079778 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAA--ACGGAGC-CT 110329 |||||||| |||||||| || | || || || || |||||| | || | |||| || Sbjct 34641802 ATGCAAATCTTTGTCAAGACGCTTACTGGAAAGACAATTACCTTGGAGGTAGAGAGCTCT 34641861 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || ||| | | | | || || ||||| |||||||| || | || ||| Sbjct 34641862 GA---TACAATTGACAATGTTAAGGCAAAGATCCAAGACAAAGAGGGAATTCCTCCAGAT 34641918 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || | || | ||| || || ||| ||||||| | || ||| |||| |||||| Sbjct 34641919 CAGCAGAGGTTGATATTTGCTGGGAAGCAGTTGGAGGACGGAAGGACATTGGCAGATTAC 34641978 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||| ||||| || | || |||| || || ||| | || |||| Sbjct 34641979 AACATTCAAAAGGAATCCACACTTCATTTGGTATTGAGGCTGAGGGGTGGAA 34642030 >seq2 Length=43913520 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| || || || ||||| |||||||||| ||||| || |||| ||| || Sbjct 31249574 AAAATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGTCT 31249633 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | | || || ||||| |||||||||||| | || ||| Sbjct 31249634 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCGGAC 31249693 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | || || || ||||||||||| | |||||| | || || ||| Sbjct 31249694 CAGCAGCGCCTCATCTTCGCCGGAAAGCAGCTGGAGGACGGCAGAACCCTAGCCGACTAC 31249753 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||| || || || || || Sbjct 31249754 AACATCCAGAAGGAGTCCAC 31249773 >seq1 Length=51465339 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || ||||| | |||||||||||||| ||| | || ||| | Sbjct 30446454 AATGCAGATCTTCGTAAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAATCCTC 30446395 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || ||| | | || ||| || || |||||||||||| | || || || Sbjct 30446394 CGACACCATCGACAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCCGACCA 30446335 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | || || | || || |||||||| ||||| | |||||| | || || ||||| Sbjct 30446334 GCAACGCCTCATCTTCGCCGGAAAACAGCTCGAGGACGGCAGAACCCTAGCCGACTACAA 30446275 Query 110452 CATTCAAAAAGAATCTAC 110469 ||| || || ||||| || Sbjct 30446274 CATCCAGAAGGAATCCAC 30446257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412817317947218