Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3 123 4e-22 seq1 122 1e-21 >seq3 Length=50312079 Score = 123 bits (136), Expect = 4e-22 Identities = 193/276 (70%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 796140 AAAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGC 796199 |||| ||| ||||| | || || ||||||||||| || | ||||||| ||||| Sbjct 34658725 AAAAGCCCTCGCCTCCGCCACCTGCACCTCCTTCATAAACCTCCCGGCCAAATTCTCGAG 34658666 Query 796200 CACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTC 796259 ||| ||||| || ||||||||||| ||||| || || | |||||||| ||| || Sbjct 34658665 CACAATGCCATCAGAAGCGGCGAAAAAAGCGAGAACATGGGTAATAAAGTGCTTCTCATC 34658606 Query 796260 GTCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCA 796319 | | | ||||||| || | || | ||||| |||||||||||||| Sbjct 34658605 AGAAGTCAAAGCTTCCCAGTGAACATTATCTTGAGATAAATCGACTTCCTCGGCGGTCCA 34658546 Query 796320 AAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAG 796379 || ||||||||||| || |||||||||||||| ||| | |||| | || ||||||| Sbjct 34658545 GAAAGAGGCCTCGGCTTTCTTGTACATCTCCCAGATCTGAGGGTATTGAATTGGGAACAT 34658486 Query 796380 AACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 | ||||| | |||||| | || |||||||| Sbjct 34658485 ACAGAAGCGGTCCGGGTTCGGGGCGAGGAGCGGCTC 34658450 >seq1 Length=51465339 Score = 122 bits (134), Expect = 1e-21 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 796146 CCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGAT 796205 ||| ||||| | || ||||||||||||||||| | |||||| || ||||| |||||| Sbjct 39366035 CCTAGCCTCCGCCACCTGGACCTCCTTCATGAACCTGCCGGCGAGATTCTCGAGCACGAT 39366094 Query 796206 GCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCT 796265 |||||| |||||||| || ||||| ||||| ||| ||||| ||||| | | Sbjct 39366095 GCCGTCAGAAGCGGCGAAGAAAGCGAGCACGTGAGTGACGAAGTGTTTCTCGTTGGGAGT 39366154 Query 796266 GAGCGAGACCCAGTGGACCGTGTC-GGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGG 796324 || | | || | ||||| ||| | ||||| || ||||||||||| |||| Sbjct 39366155 TAGGGTTTGGAAATGAGCAGTGTCTTGCG-ATAAATCGACTTCTTCGGCGGTCCAGAAGG 39366213 Query 796325 AGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 | |||||||| || |||||||| ||||| || | |||| |||| ||||||| Sbjct 39366214 AAGCCTCGGCTTTCTTGTACATTTCCCAGATTTGGGGGTATTGGATAGGGAACA 39366267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915733036368614