Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 seq7 91.5 1e-13 seq3 91.5 1e-13 seq6 87.8 1e-12 >seq2 Length=43913520 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || || || ||||| |||| ||||| ||||| || |||| ||| || Sbjct 31249574 AAAATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGTCT 31249633 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || ||| | | || || ||||| || ||||||||| | || ||| Sbjct 31249634 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCGGAC 31249693 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || || ||||||||||||| || ||| | || |||||| Sbjct 31249694 CAGCAGCGCCTCATCTTCGCCGGAAAGCAGCTGGAGGACGGCAGAACCCTAGCCGACTAC 31249753 Query 107733 AACATTCAAAAGGAGTCTAC 107752 ||||| || |||||||| || Sbjct 31249754 AACATCCAGAAGGAGTCCAC 31249773 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| ||||| || || ||||| || || |||||| | || ||| ||| | Sbjct 39747578 ATGCAGATTTTCGTCAAGACCTTGACAGGAAAGACTATTACCCTTGAGGTTGAGAGCTCG 39747637 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | || ||| ||||| ||||| ||||| | || || || Sbjct 39747638 -GATACTATTGACAATGTGAAAGCTAAGATCCAGGATAAGGAAGGGATCCCACCAGACCA 39747696 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| ||||| ||||| ||||||| | ||| | || || ||||| Sbjct 39747697 GCAGAGGCTCATCTTTGCTGGTAAGCAGCTTGAGGACGGAAGAACCCTAGCTGATTACAA 39747756 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| || || || || Sbjct 39747757 CATTCAGAAAGAATCAAC 39747774 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| || || |||||||| || |||||| | || ||| ||| | Sbjct 39747806 ATGCAGATTTTTGTCAAGACCTTGACAGGCAAGACTATTACCCTGGAGGTTGAGAGCTCG 39747865 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || ||| ||||| || || ||||| | ||| || || Sbjct 39747866 -GATACGATTGACAATGTGAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCA 39747924 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | || ||||| || |||||||| | || || | || |||||||| Sbjct 39747925 GCAGAGGTTGATCTTCGCTGGTAAGCAACTGGAGGATGGCAGGACTCTTGCAGACTACAA 39747984 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| || ||||| || Sbjct 39747985 CATTCAGAAAGAGTCAAC 39748002 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || || ||||| || || |||||| | ||| ||| | Sbjct 39748034 ATGCAGATTTTTGTCAAGACCTTGACAGGAAAGACTATTACCCTTGAAGTTGAGAGTTCA 39748093 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || ||||| || || ||||| | ||| || || Sbjct 39748094 GATACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCAA 39748153 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | || ||||| ||| ||||||||| || || | || ||||||||| Sbjct 39748154 CAGAGGTTGATCTTCGCTGGTAAGCAGTTGGAGGACGGCAGGACCCTTGCCGACTACAAC 39748213 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || || ||||||||||| | || | |||||| | | || || |||| Sbjct 39748214 ATCCAGAAGGAGTCTACACTCCATCTTGTGTTGCGTCTTCGTGGTGGAA 39748262 >seq7 Length=36358036 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || || ||||| | || |||||||| || ||| | || ||| | Sbjct 14364546 AAGATGCAGATCTTCGTGAAAACCCTCACCGGCAAAACTATCACCCTGGAGGTGGAATCC 14364605 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || ||| | | || ||| |||||| || ||||||||| | || ||| Sbjct 14364606 TCCGACACAATCGACAATGTCAAAGCCAAGATTCAAGACAAAGAAGGCATCCCGCCGGAC 14364665 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || || ||||| ||||||| || ||| | || |||||| Sbjct 14364666 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTAC 14364725 Query 107733 AACATTCAAAAGGAGTCTAC 107752 ||||| || |||||||| || Sbjct 14364726 AACATCCAGAAGGAGTCCAC 14364745 >seq3 Length=50312079 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 107631 GTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTAT 107690 || ||| ||||||| || || |||||| | || || |||||||| ||||| | | Sbjct 6144027 GTGAAAGCAAAGATTCAGGACAAGGAAGGCATCCCACCAGACCAGCAGAGGCTTATATTT 6144086 Query 107691 GCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCT 107750 || || || ||||||||||| | | ||| |||| |||||||| ||||||||||||||| Sbjct 6144087 GCTGGAAAGCAGCTGGAGGATGGCCGCACACTGGCCGACTACAATATTCAAAAGGAGTCT 6144146 Query 107751 ACGTTGCACATGGTG 107765 || | || ||||| Sbjct 6144147 ACCCTTCATCTGGTG 6144161 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || ||| | || || || || |||||| | ||| || | Sbjct 6143724 ATGCAAATCTTTGTTAAGACTCTCACTGGGAAGACGATTACCCTTGAAGTAGAAAGTTCT 6143783 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| || ||| || || || || | ||| || ||| Sbjct 6143784 GATACAATTGACAATGTGAAAGCGAAAATTCAAGACAAGGAGGGAATTCCCCCAGACCAG 6143843 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | |||| ||| ||||| || ||||||| | | ||| |||| || |||||| Sbjct 6143844 CAGAGGTTGATTTTTGCTGGTAAGCAATTGGAGGATGGTAGGACATTGGCTGATTACAAC 6143903 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||| || || | || |||| ||||| ||| |||| || Sbjct 6143904 ATTCAAAAGGAATCCACTCTTCATCTGGTATTGAGGTTGAGAGGTGG 6143950 >seq6 Length=36610139 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| |||||||| || | || || || || |||||| | || ||| ||| Sbjct 34641802 ATGCAAATCTTTGTCAAGACGCTTACTGGAAAGACAATTACCTTGGAGGTAGAGAGCTCT 34641861 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || |||||| || ||||| || | || ||||| Sbjct 34641862 -GATACAATTGACAATGTTAAGGCAAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCA 34641920 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || || ||| ||||||||| | ||| |||| || ||||| Sbjct 34641921 GCAGAGGTTGATATTTGCTGGGAAGCAGTTGGAGGACGGAAGGACATTGGCAGATTACAA 34641980 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||||||||| || || | || |||| ||||| || | || |||| Sbjct 34641981 CATTCAAAAGGAATCCACACTTCATTTGGTATTGAGGCTGAGGGGTGGAA 34642030 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| |||||||| || | || || || || || ||| | ||| ||| ||| Sbjct 34079353 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACCTTGGAAGTAGAGAGCTC 34079412 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 |||||| ||| | | || || |||||| || || || || | || |||| Sbjct 34079413 -CGATACGATCGACAATGTTAAGGCAAAGATCCAAGACAAGGAGGGAATTCCTCCAGATC 34079471 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| | || | ||| || || ||| ||||||||| | || |||| || |||| Sbjct 34079472 AGCAGAGGTTGATATTTGCTGGGAAGCAGTTGGAGGACGGAAGGACCTTGGCAGATTACA 34079531 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||||||| ||||| || || | || |||| ||||| || | || |||| Sbjct 34079532 ACATTCAGAAGGAATCCACTCTTCATTTGGTATTGAGGCTGAGGGGTGGAA 34079582 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| |||||||| || || || ||||| || || ||||| | || |||| ||| Sbjct 34407443 AATGCAGATTTTTGTGAAGACATTGACAGGAAAGACAATTACTTTGGAGGTGGAGAGCTC 34407502 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | || || ||| ||| |||||||||||| | || || | Sbjct 34407503 A-GACACAATTGATAATGTGAAGGCAAAAATTCAGGATAAAGAAGGCATCCCACCAGACC 34407561 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || |||| ||| ||||| ||||| ||||| | || | || ||||||| Sbjct 34407562 AGCAGAGGCTGATTTTTGCTGGTAAGCAGCTTGAGGATGGTCGTACCCTTGCTGACTACA 34407621 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 | ||||| || || ||||| | ||| ||||| Sbjct 34407622 ATATTCAGAAAGAATCTACCCTCCACTTGGTG 34407653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398853339313114