Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq1 104 2e-17 seq3 93.3 4e-14 seq2 86.0 6e-12 seq15 84.2 2e-11 >seq6 Length=36610139 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GC 137242 ||| || |||| ||| | ||| ||||||| || ||||| || || || |||||||| || Sbjct 34079125 GCCACCACGTAGACGAAGAACCAAATGAAGGGTGGATTCCTTCTGAATATTGTAATCAGC 34079066 Query 137243 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | | |||| || || || |||||||||||| |||| || | |||||||| |||| Sbjct 34079065 TAAG-GTGCGACCATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGAG 34079007 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||| ||||| ||| || || | | || | ||||||| | ||||| Sbjct 34079006 GGATACCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCAATGGTGTCTGAGCTTTCTA 34078947 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | |||| ||| | ||||| ||||| | || || || || || ||||| Sbjct 34078946 CCTCAAGAGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 34078898 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| ||||||||||| || |||||||| ||| || || || || || || || Sbjct 34407874 TGAAGGGTAGATTCTTTCTGGATGTTGTAGTCGGCCAAAGTCCTTCCATCCTCTAGCTGC 34407815 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || |||||| |||||| | |||||||| ||||| ||||| |||||||| ||| || Sbjct 34407814 TTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATGCCCTCTTTGTCCTGAATCTTC 34407755 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || | | || | |||||| | | ||| ||||| | ||| | |||||| || ||| Sbjct 34407754 GCCTTCACATTATCAATCGTGTCCGAGCTTTCAACTTCTAGAGTGATCGTCTTCCCAGTC 34407695 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 || || || || || || ||||| Sbjct 34407694 AACGTCTTGACAAAGATCTGCAT 34407672 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GC 137242 ||| || |||| ||| | ||| ||||||| || ||||| || || || |||||||| || Sbjct 34641573 GCCACCACGTAGACGAAGAACCAAATGAAGGGTCGATTCCTTCTGAATATTGTAATCAGC 34641514 Query 137243 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | | || | || || || |||||||||||| |||| || | |||||||| |||| Sbjct 34641513 TAAG-GTACGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCTGGAG 34641455 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||||||||| ||| || || | | || | ||||| | | ||||| Sbjct 34641454 GGATACCTTCTTTGTCTTGAATCTTAGCCTTGACATTGTCAATGGTGTCCGAGCTTTCTA 34641395 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | |||| ||| | ||||| || || | ||||| || || || ||||| Sbjct 34641394 CCTCAAGAGTGATGGTCTTCCCAGTAAGAGTTTTCACAAAGATCTGCAT 34641346 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GC 137242 ||| || || | ||| | ||| ||||||| || ||||| || || || || || || || Sbjct 34406759 GCCACCGCGGAGACGAAGAACCAAATGAAGGGTGGATTCCTTCTGAATATTATAGTCAGC 34406700 Query 137243 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | | || || || ||||| ||||| || ||| |||| || | ||||||||||||| Sbjct 34406699 TAAA-GTCCTTCCATCCTCGAGCTGTTTGCCCGCAAAGATAAGCCTCTGCTGATCGGGAG 34406641 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | |||||||| ||||| ||| || || | | || | ||||| | | ||| | Sbjct 34406640 GGATGCCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCAA 34406581 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | |||| || | ||||| ||||| | ||||| || || || ||||| Sbjct 34406580 CCTCAAGGGTTATGGTCTTTCCGGTAAGAGTTTTCACAAAGATCTGCAT 34406532 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 ||| || ||||||| ||| ||||| ||||| ||||||||||| || ||| || ||| Sbjct 34642014 CAATACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCTGCCAATGTCCTTCCGTC 34641955 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 || | || || |||||| | |||| | |||||||| ||||| || || |||||||| Sbjct 34641954 CTCCAACTGCTTCCCAGCAAATATCAACCTCTGCTGATCTGGAGGAATTCCCTCTTTGTC 34641895 >seq1 Length=51465339 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| || || |||||||| ||| | || || ||| ||||| ||||| || Sbjct 30446257 GTGGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGTTTTCCG 30446316 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| || |||||||| |||||||| |||||||||||||| ||||| ||| Sbjct 30446317 GCGAAGATGAGGCGTTGCTGGTCGGGAGGGATGCCTTCTTTGTCTTGGATTTTGGCTTTG 30446376 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | || ||| || || | || | || |||||||| | ||| Sbjct 30446377 ACATTGTCGATGGTGTCGGAGGATTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTT 30446436 Query 137395 TTTACGAATATTTGCAT 137411 |||||||| || ||||| Sbjct 30446437 TTTACGAAGATCTGCAT 30446453 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| |||||| || || || ||||||||||| | || || |||||| | ||| Sbjct 45561447 TGAAGTGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTCCTGCCGTCTTCCAATTGC 45561388 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || |||||| |||||| ||| |||||||| || || || ||||| ||||| ||| || Sbjct 45561387 TTTCCAGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGAATCTTA 45561328 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || | | || | ||||| | | || || |||| ||| | ||||| |||||| Sbjct 45561327 GCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCAAGAGTAATAGTCTTTCCGGTC 45561268 Query 137389 AATGTTTTTACGAATATTTGCATA 137412 || || || || || || |||||| Sbjct 45561267 AAGGTCTTGACAAAGATCTGCATA 45561244 >seq3 Length=50312079 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 137243 || || |||| ||||| ||| ||||||| || || || || || ||||||||||| ||| Sbjct 6143266 CCCCCACGTAGACGCAGAACCAAATGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGCT 6143207 Query 137244 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | || | || | || || || || ||||||||| |||| || | |||||||| |||| Sbjct 6143206 -AAGGTCCGTCCA-TCCTCTAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGATCTGGAG 6143149 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||| ||||| ||| || ||| | | || | ||||| | ||| | Sbjct 6143148 GGATACCTTCCTTGTCTTGAATCTTCGCTTTGACATTGTCAATAGTGTCCGAACTTTCAA 6143089 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | || | || | |||||||| || | ||||| || ||||| ||||| Sbjct 6143088 CCTCGAGGGTGATTGTCTTGCCAGTAAGAGTTTTCACAAATATCTGCAT 6143040 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || |||| ||||| ||| ||||||| || || || || || |||||||||||| | Sbjct 6143494 CCCCCACGTAGACGCAGAACCAAATGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGCC 6143435 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | || | || || || |||||||||||| |||| || | ||||| || || || Sbjct 6143434 AAGGTCCGTCCA-TCCTCTAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGTGG 6143376 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || ||||| || || ||| | | || | || || | | ||| || Sbjct 6143375 GATACCCTCCTTGTCCTGGATCTTAGCTTTGACATTATCAATGGTATCAGAGCTTTCGAC 6143316 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | ||| | |||||||| || | ||| ||||| || || ||||| Sbjct 6143315 TTCTAGAGTGATAGTCTTGCCAGTAAGTGTCTTTACAAAAATCTGCAT 6143268 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| |||| || | ||| || | ||||| || ||||| ||||| ||||||||||| Sbjct 6143951 GCCACCTCTCAACCTCAATACCAGATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGC 6143892 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || ||| || || || | ||| ||||||||| | |||| | ||||| || || || Sbjct 6143891 CAATGTCCTACCATCCTCCAATTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGG 6143832 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || ||||| |||||| ||| | | || | || || | |||||| Sbjct 6143831 AATTCCCTCCTTGTCTTGAATTTTCGCTTTCACATTGTCAATTGTATCAGAACTTTCTAC 6143772 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| || | |||||| || || | || || || || |||||||| Sbjct 6143771 TTCAAGGGTAATCGTCTTCCCAGTGAGAGTCTTAACAAAGATTTGCAT 6143724 >seq2 Length=43913520 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || | ||| | ||| || || || || |||||||| || | Sbjct 39747348 CCCCCGCGGAGACGGAGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCC 39747289 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || |||||||| || |||||||| | || |||||||||||||| ||||| Sbjct 39747288 AGAGTCCTGCCATCTTCGAGCTGCTTACCAGCGAAAATAAGACGTTGCTGATCAGGAGGA 39747229 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||| ||||| || || ||| | | || | ||||| | ||| || Sbjct 39747228 ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATTGTGTCAGAACTTTCCACC 39747169 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| ||||||| ||||| || || || ||||| Sbjct 39747168 TCCAAGGTGATGGTCTTTCCGGTCAGAGTTTTCACAAAGATCTGCAT 39747122 >seq15 Length=668940 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | |||||| || | ||| ||| || || || || ||||||||||| Sbjct 334918 GCCACCACGAAGACGCAACACAAGATGGTGTGTGGACTCCTTCTGGATGTTGTAATCAGC 334859 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || || || ||| || | ||| ||||||||| |||||| ||| ||||| || || || Sbjct 334858 CAGGGTCCTGCCGTCCTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCGG 334799 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| || || || | | || | || |||| | || || Sbjct 334798 AATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTATCTGAGCTCTCAAC 334739 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| | ||| | ||||| || ||||| || || || || || |||||| Sbjct 334738 TTCGAGAGTAATAGTCTTCCCTGTCAAGGTCTTGACAAAGATCTGCATA 334690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488514528583200