Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq4507 291 2e-74 >seq4507 Length=1168 Score = 291 bits (322), Expect = 2e-74 Identities = 611/896 (68%), Gaps = 36/896 (4%) Strand=Plus/Minus Query 17749 CGCATCATCCATAGATTGCTCAGGGCAAACAACGTATGTAACTGCTGCGTGTTCTTCACC 17808 ||| ||||||| || || || |||||||| || | | |||| |||||||| || Sbjct 1009 CGCTTCATCCACAGGTTCGATAGCGCAAACAAGGTCAGCACCTGCGCGGTGTTCTTGGCC 950 Query 17809 AAGCCTCGATAGCGCACCTTCAAATGCCCGAACTGGCGCTTGATGACCCGGAACGGATGT 17868 | ||| |||||||| ||||| | ||||||||||||||||| |||||||| ||||| Sbjct 949 AGGCCGCGATAGCGGACCTTGGTGTAGCCGAACTGGCGCTTGATCACCCGGAATGGATGC 890 Query 17869 TCTACGCGAGCACGAATGCGCGCCTTGACCCGCTCC-AAC-TCATCGACGAGCGCACCCG 17926 || || || || | || ||||||| | ||| ||| || | ||||| | | || Sbjct 889 TCCACCTTCGCGCGCACGCTGGCCTTGAAGTGTTCCCAACGTCTTTCCCGAGCACGCTCG 830 Query 17927 ACACGGTGTTCTTGTCCAAGGCG-----CGGCGTTTGCTCGGTCGCAATGCCACATGCCA 17981 || || ||| | | ||| || || || || || ||| | | | Sbjct 829 C----GT-TTGTTGCCGAGGGCTTGCATCGTCGAGGGCCTGGCGGCGATG----AAG--A 781 Query 17982 ACGCA-CCTTCAACTTCTGCACCTCTTCGCGCTTGTCGATGCCCTGGTAGCCGGCATCGC 18040 | ||| |||| | ||||| |||||||| ||||| || ||||||| ||||| Sbjct 780 ATGCAGCCTTGCAGGCCTGCAGTTCTTCGCGTTTGTCCGCACCGGTGTAGCCGCTATCGC 721 Query 18041 CGAATACGTCGGCCTCCTTACCGTGCACCAACGCATGCGCTTGCGTCACGTCGTTGACGT 18100 |||| ||| | | || || || |||| ||||| ||| ||| || ||| ||||| Sbjct 720 CGAACACGCTGTCTTCTTTGCCATGCAGCAACGTGTGCATCACCGTGACATCGGCGACGT 661 Query 18101 TGGCGGCCGTGCCCAGCACGGTATGCACCAGCCCCGAGTCCGCATCCACGCCAATGTGCG 18160 ||||||| |||| | ||| ||||||| ||| || |||||||||| ||||||| Sbjct 660 TGGCGGCTGTGCAATGGACGTGGTGCACCAACCCGGAAAATTCATCCACGCCGATGTGCG 601 Query 18161 CTTTCATTCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCGGGGTCGCGCT 18220 | ||||| ||||||| |||||| || || ||||||||||| |||||||| ||||||||| Sbjct 600 CCTTCATCCCGAAATACCACTGATTGCCCTTCTTGGTCTGATGCATCTCAGGGTCGCGCG 541 Query 18221 TGCCGCTGCCATTCTTGGTCGAGCTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGTGC 18280 | | | ||||||||||||| |||||||| || ||||||| || ||||| | ||||| Sbjct 540 CGTTGTCGGCATTCTTGGTCGAACTGGGCGCCGCGATCAGCGTCGCATCGACGATCGTGC 481 Query 18281 CCTCTTTGA--GCAGG---TAGCCCTT-CGCACTGAGTTGCGCGTTGACCGTCTGCAGAA 18334 || || ||||| | |||||| ||| | || ||||||||||||| | ||| | Sbjct 480 CC-----GACCGCAGGCTCTGGCCCTTGCGCGC-CAGATGCGCGTTGACCGCTTCCAGCA 427 Query 18335 ATTGCTCGGCCAGTTGGTGTCGCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGT 18394 || |||| || || |||||||| | |||||||| ||||| || | || Sbjct 426 TCCGCGCGGCAAGGCCATGGGTCTCCAGCAGGCGCCGAAAGTTGAGAATCGTGGTCTCGT 367 Query 18395 CCGGCA-GTCGGCTTATGCCTCCCAGCCCCGCGAATTGCCGATACAACGGCACGTCGTAC 18453 |||| | || | | | ||| || ||| || || |||| | ||| | |||| | Sbjct 366 CCGGAACGTTGTC-CAAGCCACCGAGCTGGGCAAACCGCCGCAAGGTCGGGATCTCGTGC 308 Query 18454 AGCGCCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATGCGC 18513 || || |||||||||||| || ||||| | |||| |||||||| | || || ||| Sbjct 307 AGTGCTTCTTCCATCGCCGGATCGCTCAGCGCATACCACTGCTGCAGCAGATGAATCCGC 248 Query 18514 AGCATCGTTTCGACTGGAAACGGCTTCCGACCCGTC---GCCTTGACCGGCGCATGCGGC 18570 | |||||| | | || |||||| |||||| | | || ||||| |||||| Sbjct 247 AACATCGTCGCCAGTGCGTACGGCTGCCGACCTGGCCGGCCCGATACCGGATAGTGCGGC 188 Query 18571 GCTATCAACGCCAAAAACGCCTGCCACGGCACCACACGTTCCATCTCATCCAGAAA 18626 || |||| | | | ||||||||| ||||| | |||||||| ||||||| Sbjct 187 GCGATCAGACCGAGCAGTTGCTGCCACGGAACCACCTGCTCCATCTCGGCCAGAAA 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127877471081968