Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq4825 578 1e-160 seq6 412 1e-110 seq8 369 1e-97 seq36 120 9e-23 seq4 111 5e-20 seq1 107 6e-19 >seq4825 Length=155848 Score = 578 bits (640), Expect = 1e-160 Identities = 721/978 (74%), Gaps = 10/978 (1%) Strand=Plus/Minus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | || ||| | ||||||||||| |||| |||||||| ||||||| Sbjct 1272 TAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 1213 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628 || | | | | || || |||| || ||||| || |||||||| ||||| |||| Sbjct 1212 CCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAG 1154 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || ||||| || || || || |||||||| ||||| || | Sbjct 1153 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGCAACAATATTA 1094 Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | || || ||| | |||||| | ||| || || || | ||||| || ||||| || Sbjct 1093 TTTCCGGTGCCATTATTCCGACTTCTGCA--GCTATAGGTTTGCACTTTTATCCAATCTG 1036 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 |||||| ||| ||||||||||| | |||||||| || || | || | | || | Sbjct 1035 GGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGTCCTTATGAATTAATCGTTCT 976 Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866 ||||| | |||| | | ||||||||| || |||||||| ||||| | || || Sbjct 975 ACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCT 916 Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGT 19926 ||| ||| | ||||||||| |||||| || || ||||| |||||||| || |||| || Sbjct 915 AGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT 856 Query 19927 CTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCT 19985 ||||| | ||||||| | ||||| || ||||| || |||| ||||||| | || |||| Sbjct 855 -TTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCT 797 Query 19986 CGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGT 20045 | ||||| ||||||| |||| | |||||||| || || || ||||| || |||||||| | Sbjct 796 CTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCAT 737 Query 20046 TCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTT 20105 | |||||| | || || |||||||||||||| || || ||||| ||||| ||||| |||| Sbjct 736 TTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTT 677 Query 20106 CGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGT 20164 | | || || || | | ||| | | || || || ||| | ||| | || | ||| Sbjct 676 CTTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 618 Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224 |||| ||| |||||||||||||| || ||||| |||||||||||||||||||| ||||| Sbjct 617 TACAGGTTCGGGCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGC 558 Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284 || || ||||||||||| ||| ||||||||| |||||| ||||||||||||| ||| Sbjct 557 CGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCT 498 Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344 || ||||| || ||||| || ||||| |||| || || | || ||||| || || Sbjct 497 GCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAAC 438 Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404 || || |||||||| || ||||| || | | || | | || ||||| ||| ||||| Sbjct 437 CTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACT 378 Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464 |||||||| || | || || ||||| || || | || || ||||| ||||| |||||| Sbjct 377 TGGGCTGATATCATTAACCGCGCTAACCTTGGTATGGAAGTTATGCACGAACGTAATGCT 318 Query 20465 CATAACTTCCCACTTGAC 20482 ||||||||||| || ||| Sbjct 317 CATAACTTCCCTCTAGAC 300 >seq6 Length=36610139 Score = 412 bits (456), Expect = 1e-110 Identities = 464/613 (76%), Gaps = 6/613 (1%) Strand=Plus/Plus Query 19837 GGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTA 19896 |||| ||||| |||| ||||| | || ||||| ||| | ||||||||| |||||| || Sbjct 34152484 GGGA-GAGAGAGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATA 34152542 Query 19897 CTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTA 19955 || ||||| |||||||| || |||| || ||||| | ||||||| | ||||| || | Sbjct 34152543 TTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCAATCGGTCAAGGAA 34152601 Query 19956 GCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCC 20015 |||| || |||| ||||||| | || ||||| ||||| ||||||| |||| | ||||||| Sbjct 34152602 GCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCC 34152661 Query 20016 AAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCG 20075 | || || || ||||| || |||||||| || |||||| | || || ||||||||||||| Sbjct 34152662 AGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCG 34152721 Query 20076 GTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAG 20134 | || || ||||| ||||| ||||| ||||| | || || | || | ||| | | || Sbjct 34152722 GCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGAA 34152780 Query 20135 ACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTAT 20194 || || ||| | ||| | || | ||||||| ||| |||||||||||||| || ||| Sbjct 34152781 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACTTAT 34152840 Query 20195 AACATCGTAGCCGCTCATGGTTACTTTGG-ACGTTTGATCTTCCAATACGCTTCTTTCAA 20253 || |||||||||||||||||||| ||||| || || ||||||||||| ||| |||||| Sbjct 34152841 AATATCGTAGCCGCTCATGGTTATTTTGGTCCGATTAATCTTCCAATATGCTAGTTTCAA 34152900 Query 20254 CAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGC 20313 ||| |||||| ||||||||||||| ||||| ||||| || ||||| || ||||| | Sbjct 34152901 CAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTAC 34152960 Query 20314 TGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCT 20373 ||| || || | || ||||| || || || || |||||||| || ||||| || | Sbjct 34152961 TGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGT 34153020 Query 20374 TCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCT 20433 | || | | || ||||| ||| ||||||||||||| || | || || ||||| || Sbjct 34153021 AGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGCGCTAACCT 34153080 Query 20434 CGGGTTTGAGGTG 20446 || | |||||| Sbjct 34153081 TGGTATGGAGGTG 34153093 >seq8 Length=31745509 Score = 369 bits (408), Expect = 1e-97 Identities = 365/467 (78%), Gaps = 4/467 (1%) Strand=Plus/Plus Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 ||||||||| || |||||||| ||||| | || ||||| ||| | ||||||||| ||| Sbjct 5168712 TTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGT 5168771 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTC 19949 ||| || || ||||| |||||||| || |||| || ||||| | ||||||| | |||| Sbjct 5168772 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCAATCGGTC 5168830 Query 19950 AGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGG 20009 | || ||||| || |||| ||||||| | || ||||| ||||| ||||||| |||| | | Sbjct 5168831 AAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTG 5168890 Query 20010 TATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTG 20069 ||||||| || || || ||||| || |||||||| || |||||| | || || ||||||| Sbjct 5168891 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTG 5168950 Query 20070 TATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TG 20128 ||||||| || || ||||| ||||| ||||| ||||| | || || | || | ||| | Sbjct 5168951 TATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATC 5169009 Query 20129 CGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAG 20188 | || || || ||| | ||| | || | ||||||| ||| |||||||||||||| Sbjct 5169010 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAA 5169069 Query 20189 ACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCT 20248 || ||||| |||||||||||||||||||| ||||| || || ||||||||||| ||| | Sbjct 5169070 ACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGT 5169129 Query 20249 TTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGT 20295 |||||||| |||||| ||||||||||||| ||||| ||||| || Sbjct 5169130 TTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGT 5169176 Score = 95.1 bits (104), Expect = 4e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | || ||| | ||||||||||| |||| |||||||| |||||| Sbjct 2878690 TAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGA- 2878748 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTG-CTTCATTATTGCATTCATTGCGGCTCCACCAG 19628 ||| | | ||| || | |||| || ||||| || |||||||| ||||| |||| Sbjct 2878749 TCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAG 2878808 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || ||||| || || || || |||||||| ||||| || | Sbjct 2878809 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGCAACAATATTA 2878868 Query 19689 TATCGGGAGCCGTCGTTCCGA 19709 | || || ||| | |||||| Sbjct 2878869 TTTCCGGTGCCATTATTCCGA 2878889 >seq36 Length=917149 Score = 120 bits (132), Expect = 9e-23 Identities = 189/266 (71%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 19526 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 19585 ||| | ||||||||||| |||| |||||||| ||||||| || | | | | Sbjct 329976 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACC 329917 Query 19586 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCAT 19644 || || |||| || ||||| || |||||||| ||| ||||| || |||||||| || Sbjct 329916 GCAACT-TCTGTATTTATTATCGCCTTCATTGCCATTCCTCCAGTAGATATTGATGGTAT 329858 Query 19645 CCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGT 19704 || ||||| || || || || |||||||| ||||| || || || || ||| | | Sbjct 329857 TCGTGAACCTGTTTCAGGATCTCTACTTTATGGCAACAATATTATTTCCGGTGCCATTAT 329798 Query 19705 TCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTT 19762 ||||| | ||| || || || | ||||| || ||||| |||||||| ||| || Sbjct 329797 TCCGACTTCTGCA--GCTATAGGTTTGCACTTTTATCCAATCTGGGAAGCGGCTTCTGTT 329740 Query 19763 GATGAATGGCTCTACAACGGGGGACC 19788 ||||||||| | |||||||| || || Sbjct 329739 GATGAATGGTTATACAACGGTGGTCC 329714 >seq4 Length=35924511 Score = 111 bits (122), Expect = 5e-20 Identities = 171/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 20239 ATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGT 20298 ||| ||| ||||||||| |||||| ||||||||||||| ||||| ||||| || | Sbjct 4757218 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAAT 4757277 Query 20299 AGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAA 20358 | | || ||||| |||| || || | || ||| | || || || || | |||||| Sbjct 4757278 AAGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGACTTTCAACCTAAATGATTTCAA 4757337 Query 20359 CTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCT 20418 || ||||| || | | || | | | |||| ||| ||||||| ||||| || | Sbjct 4757338 TTTCAACCAATCTGTAGTTGATAGTCAAGCCTGTGTAATTAATACTTGAGCTGATATCAT 4757397 Query 20419 CAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACT 20478 || || |||||||| || || || |||| |||| ||||||||||||||| | || Sbjct 4757398 TAACCGCGCTAATCTTGGTAAAGAAGTTATGCTCGAACATAATGCTCATAACTTCTCTCT 4757457 Query 20479 TGAC 20482 ||| Sbjct 4757458 AGAC 4757461 Score = 89.7 bits (98), Expect = 2e-13 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTT-ACTT 20220 ||||||||||| |||||||||||||| || ||||| ||||||||| |||||||| | || Sbjct 4755093 GGTTACAAGTTCGGGCAAGAAGAAGAAACTTATAATATCGTAGCCATTCATGGTTAATTT 4755152 Query 20221 TGGACGTTTGATCTTCCAA 20239 ||| || || ||||||||| Sbjct 4755153 TGGCCGATTAATCTTCCAA 4755171 >seq1 Length=51465339 Score = 107 bits (118), Expect = 6e-19 Identities = 189/277 (68%), Gaps = 19/277 (7%) Strand=Plus/Plus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 ||||||| ||| |||||||||||||| | | ||| |||||| || |||||||||| || Sbjct 27733156 GGTTACAGGTTCGGGCAAGAAGAAGAAGCTTGTAATATCGTACCCACTCATGGTTATATT 27733215 Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTT 20281 || || || || ||||||| ||| ||||||||| | |||| ||||||||||||| Sbjct 27733216 GGTCGATTAATATTCCAATCTGCTAGTTTCAACAACTCTCATTCTTTACACTTCTTCCTA 27733275 Query 20282 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTC--TACAATGGCGT 20339 | | | || ||||| || ||| | || || || ||||| | Sbjct 27733276 GTT----------------GTATCTGGTTTACTAGCTTAAG-GTATCAGCACTATGGCTT 27733318 Query 20340 TTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTG 20399 | ||||| || ||||||| || ||||| || | | || | | | |||| ||| Sbjct 27733319 TCAATCTAAATGGTTTCAGTTTCAACCAATCTGTAGTTGATAGTCAAGACTGTGTAATTA 27733378 Query 20400 ATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGG 20436 ||||||||||||| || || |||||||| || || Sbjct 27733379 ATACTTGGGCTGATATCGATAACCGTGCTAAGCTTGG 27733415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148820270807508